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Gene Card

Best human hits

SELENOS

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00006666

Gene Model ID

KH2012:KH.C4.565

Location

KhC4:5235951..5238452

Transcript Models and Sequences

  KH2012:KH.C4.565.v1.A.SL1-1
KH2012:KH.C4.565.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000019628
NCBI Reference Sequence NM_001190315.1
Collections

Gateway full ORF

2 results

cima836500

Plate: VES63_M01

cima859360

Plate: VES64_N11

Gene collection 1 (N. Satoh)

1 result

cieg009i10

Plate: R1CiGC17c11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
Selenoprotein_S Pfam Selenoprotein S
Selenoprotein_S PANTHER Selenoprotein S

GOSlim

30 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
cytoplasm Orthology cellular component
endoplasmic reticulum Orthology cellular component
endoplasmic reticulum membrane Orthology cellular component
plasma membrane Orthology cellular component
intracellular protein transport Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
protein ubiquitination Orthology biological process
enzyme binding Orthology molecular function
establishment of protein localization Orthology biological process
cytoplasmic part Orthology cellular component
microtubule Orthology cellular component
regulation of cellular metabolic process Orthology biological process
signal transduction Orthology biological process
cellular response to stress Orthology biological process
response to biotic stimulus Orthology biological process
response to organic substance Orthology biological process
proteolysis Orthology biological process
cellular response to organic substance Orthology biological process
extracellular space Orthology cellular component
macromolecular complex Orthology cellular component
response to oxidative stress Orthology biological process
cell Orthology cellular component
defense response Orthology biological process
response to stimulus Orthology biological process
response to lipopolysaccharide Orthology biological process
intracellular signal transduction Orthology biological process
negative regulation of signal transduction Orthology biological process
negative regulation of apoptotic process Orthology biological process

GO (Orthology)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
receptor activity Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
endoplasmic reticulum Hs cellular component
endoplasmic reticulum membrane Hs cellular component
cytoplasmic microtubule Hs cellular component
plasma membrane Hs cellular component
regulation of gluconeogenesis Hs biological process
intracellular protein transport Hs biological process
ER overload response Hs biological process
response to glucose Hs biological process
membrane Hs cellular component
integral component of membrane Hs cellular component
antioxidant activity Hs molecular function
protein ubiquitination Hs biological process
enzyme binding Hs molecular function
integral component of endoplasmic reticulum membrane Hs cellular component
ubiquitin-dependent ERAD pathway Hs biological process
endoplasmic reticulum unfolded protein response Hs biological process
retrograde protein transport, ER to cytosol Hs biological process
cellular response to insulin stimulus Hs biological process
very-low-density lipoprotein particle Hs cellular component
low-density lipoprotein particle Hs cellular component
cellular response to oxidative stress Hs biological process
Derlin-1-VIMP complex Hs cellular component
Derlin-1 retrotranslocation complex Hs cellular component
establishment of protein localization Hs biological process
cell redox homeostasis Hs biological process
negative regulation of inflammatory response Hs biological process
ATPase binding Hs molecular function
response to redox state Hs biological process
cellular response to lipopolysaccharide Hs biological process
regulation of nitric oxide metabolic process Hs biological process
cellular oxidant detoxification Hs biological process
negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway Hs biological process
ubiquitin-specific protease binding Hs molecular function

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
receptor activity Hs molecular function 90.1 2.19e-22
protein binding Hs molecular function 90.1 2.19e-22
cytoplasm Hs cellular component 90.1 2.19e-22
endoplasmic reticulum Hs cellular component 90.1 2.19e-22
endoplasmic reticulum membrane Hs cellular component 90.1 2.19e-22
cytoplasmic microtubule Hs cellular component 90.1 2.19e-22
plasma membrane Hs cellular component 90.1 2.19e-22
membrane Hs cellular component 90.1 2.19e-22
integral component of membrane Hs cellular component 90.1 2.19e-22
antioxidant activity Hs molecular function 90.1 2.19e-22
enzyme binding Hs molecular function 90.1 2.19e-22
integral component of endoplasmic reticulum membrane Hs cellular component 90.1 2.19e-22
very-low-density lipoprotein particle Hs cellular component 90.1 2.19e-22
low-density lipoprotein particle Hs cellular component 90.1 2.19e-22
Derlin-1-VIMP complex Hs cellular component 90.1 2.19e-22
Derlin-1 retrotranslocation complex Hs cellular component 90.1 2.19e-22
ATPase binding Hs molecular function 90.1 2.19e-22
ubiquitin-specific protease binding Hs molecular function 90.1 2.19e-22

GO (InterProScan)

2 results

GO Term Analysis Type e-value
intracellular protein transport PANTHER biological process 1.7E-58
integral component of endoplasmic reticulum membrane PANTHER cellular component 1.7E-58

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