Aniseed - Gene card

Gene Card

Best human hits

DMTF1; MYBL1; TTF1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007233

Gene Model ID

KH2012:KH.C5.358

Location

KhC5:3219093..3228912

Transcript Models and Sequences

KH2012:KH.C5.358.v1.R.ND2-1
KH2012:KH.C5.358.v2.A.nonSL1-1
KH2012:KH.C5.358.v2.A.nonSL3-1
KH2012:KH.C5.358.v2.A.nonSL4-1
KH2012:KH.C5.358.v2.A.nonSL5-1
KH2012:KH.C5.358.v2.A.nonSL6-1
KH2012:KH.C5.358.v2.A.nonSL7-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000003236
NCBI Reference Sequence	XM_002130994.4
NCBI Reference Sequence	XM_009860353.2

Collections

Gene collection 1 (N. Satoh)

1 result

ciad035p15

Plate: R1CiGC04g05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Myb-like_dom	ProSiteProfiles	Myb-like domain
SANT/Myb	Pfam	SANT/Myb domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
SANT/Myb	CDD	SANT/Myb domain
SANT/Myb	SMART	SANT/Myb domain
Myb_dom	ProSiteProfiles	Myb domain

GOSlim

18 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
cytosol	Orthology	cellular component
plasma membrane	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
cell cycle	Orthology	biological process
cell differentiation	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Orthology	molecular function
transcription factor binding	Orthology	molecular function
transcription initiation from RNA polymerase II promoter	Orthology	biological process

GO (Orthology)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription factor activity, RNA polymerase II transcription factor recruiting	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytosol	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
cell cycle	Hs	biological process
cell differentiation	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
transcription regulatory region DNA binding	Hs	molecular function

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	48.9	4.74e-06
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	296	7.19e-93
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	48.9	4.74e-06
transcription factor activity, RNA polymerase II transcription factor recruiting	Hs	molecular function	296	7.19e-93
DNA binding	Hs	molecular function	296	7.19e-93
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	296	7.19e-93
nucleus	Hs	cellular component	296	7.19e-93
nucleoplasm	Hs	cellular component	296	7.19e-93
nucleolus	Hs	cellular component	82.0	1.47e-16
cytosol	Hs	cellular component	296	7.19e-93
plasma membrane	Hs	cellular component	82.0	1.47e-16
sequence-specific DNA binding	Hs	molecular function	296	7.19e-93
transcription regulatory region DNA binding	Hs	molecular function	296	7.19e-93

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
DNA binding	SUPERFAMILY	molecular function	1.6E-10