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Gene Card

Best human hits

NFIA; NFIB; NFIX

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007548

Gene Model ID

KH2012:KH.C5.641

Location

KhC5:1824592..1836657

Transcript Models and Sequences

  KH2012:KH.C5.641.v1.A.ND1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XR_001974742.1
Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
MAD_homology1_Dwarfin-type Pfam MAD homology 1, Dwarfin-type
CTF/NFI_DNA-bd_CS ProSitePatterns CTF transcription factor/nuclear factor 1, conserved site
CTF/NFI_DNA-bd_N Pfam CTF transcription factor/nuclear factor 1, N-terminal
CTF/NFI_DNA-bd-dom ProSiteProfiles CTF transcription factor/nuclear factor 1, DNA-binding domain
MAD_homology1_Dwarfin-type SMART MAD homology 1, Dwarfin-type
CTF/NFI PANTHER CTF transcription factor/nuclear factor 1

GOSlim

32 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
double-stranded DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
DNA replication Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription factor binding Orthology molecular function
negative regulation of cell proliferation Orthology biological process
cell junction Orthology cellular component
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
core promoter proximal region sequence-specific DNA binding Orthology molecular function
negative regulation of transcription, DNA-templated Orthology biological process
nucleolus Orthology cellular component
animal organ development Orthology biological process
cell differentiation Orthology biological process
neurogenesis Orthology biological process
axonogenesis Orthology biological process
brain development Orthology biological process
axon Orthology cellular component
nervous system development Orthology biological process
cellular component organization Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
axon guidance Orthology biological process

GO (Orthology)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
fibrillar center Hs cellular component
chondrocyte differentiation Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
double-stranded DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
DNA replication Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription factor binding Hs molecular function
negative regulation of cell proliferation Hs biological process
glial cell differentiation Hs biological process
viral genome replication Hs biological process
anterior commissure morphogenesis Hs biological process
cell junction Hs cellular component
lung development Hs biological process
forebrain development Hs biological process
hindbrain development Hs biological process
cerebellar mossy fiber Hs cellular component
positive regulation of transcription from RNA polymerase II promoter Hs biological process
synapse maturation Hs biological process
salivary gland cavitation Hs biological process
commissural neuron axon guidance Hs biological process
negative regulation of pri-miRNA transcription from RNA polymerase II promoter Hs biological process
core promoter proximal region sequence-specific DNA binding Hs molecular function
negative regulation of transcription, DNA-templated Hs biological process

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 354 6.57e-116
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 355 5.67e-117
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 354 6.57e-116
fibrillar center Hs cellular component 344 8.03e-112
DNA binding Hs molecular function 355 5.67e-117
chromatin binding Hs molecular function 354 6.57e-116
double-stranded DNA binding Hs molecular function 344 8.03e-112
transcription factor activity, sequence-specific DNA binding Hs molecular function 355 5.67e-117
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 355 5.67e-117
protein binding Hs molecular function 355 5.67e-117
intracellular Hs cellular component 355 5.67e-117
nucleus Hs cellular component 355 5.67e-117
nucleoplasm Hs cellular component 355 5.67e-117
transcription factor binding Hs molecular function 354 6.57e-116
cell junction Hs cellular component 354 6.57e-116
cerebellar mossy fiber Hs cellular component 344 8.03e-112

GO (InterProScan)

5 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 1.3E-147
intracellular SMART cellular component 1.6E-14
nucleus PANTHER cellular component 1.3E-147
DNA replication PANTHER biological process 1.3E-147
regulation of transcription, DNA-templated PANTHER biological process 1.3E-147

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