Aniseed - Gene card

Gene Card

Best human hits

CGREF1; CHP1; MCFD2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007631

Gene Model ID

KH2012:KH.C6.115

Location

KhC6:1257093..1258696

Transcript Models and Sequences

KH2012:KH.C6.115.v1.A.ND1-1
KH2012:KH.C6.115.v2.A.SL2-1
KH2012:KH.C6.115.v2.A.SL3-1
KH2012:KH.C6.115.v2.A.SL4-1
KH2012:KH.C6.115.v2.A.SL5-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000022685
NCBI Reference Sequence	XM_002127432.3
NCBI Reference Sequence	XM_009860534.2

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

1 result

citb15p3

Plate: R1CiGC30l22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
EF_hand_dom	Pfam	EF-hand domain
EF_hand_dom	ProSiteProfiles	EF-hand domain
EF_Hand_1_Ca_BS	ProSitePatterns	EF-Hand 1, calcium-binding site
EF-hand-dom_pair	SUPERFAMILY	EF-hand domain pair

GOSlim

38 results

GO Term	Annotation Origin	Type
Golgi membrane	Orthology	cellular component
calcium ion binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular region	Blast	cellular component
nucleus	Blast	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
cytosol	Blast	cellular component
cytoskeleton	Blast	cellular component
plasma membrane	Blast	cellular component
focal adhesion	Blast	cellular component
microtubule binding	Blast	molecular function
endomembrane system	Orthology	cellular component
protein transport	Orthology	biological process
microtubule cytoskeleton	Blast	cellular component
membrane	Blast	cellular component
kinase binding	Blast	molecular function
metal ion binding	Orthology	molecular function
membrane organization	Orthology	biological process
extracellular exosome	Blast	cellular component
cytoplasmic part	Orthology	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
intracellular transport	Orthology	biological process
whole membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
cellular protein modification process	Orthology	biological process
organelle organization	Orthology	biological process
enzyme regulator activity	Blast	molecular function
protein kinase binding	Blast	molecular function
protein kinase activity	Blast	molecular function
metal ion transport	Blast	biological process
molecular function regulator	Blast	molecular function
transmembrane transport	Blast	biological process
monovalent inorganic cation transport	Blast	biological process

GO (Orthology)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
Golgi membrane	Hs	cellular component
calcium ion binding	Hs	molecular function
protein binding	Hs	molecular function
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component
Golgi apparatus	Hs	cellular component
ER to Golgi vesicle-mediated transport	Hs	biological process
ER to Golgi transport vesicle membrane	Hs	cellular component
protein transport	Hs	biological process
vesicle-mediated transport	Hs	biological process
protein N-linked glycosylation via asparagine	Hs	biological process
endoplasmic reticulum-Golgi intermediate compartment membrane	Hs	cellular component
metal ion binding	Hs	molecular function
COPII vesicle coating	Hs	biological process

GO (Blast)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	90.1	9.13e-24
protein kinase inhibitor activity	Hs	molecular function	36.6	0.002
transporter activity	Hs	molecular function	36.6	0.002
calcium ion binding	Hs	molecular function	90.1	9.13e-24
protein binding	Hs	molecular function	90.1	9.13e-24
extracellular region	Hs	cellular component	38.9	4.24e-04
nucleus	Hs	cellular component	36.6	0.002
cytoplasm	Hs	cellular component	36.6	0.002
endoplasmic reticulum	Hs	cellular component	90.1	9.13e-24
endoplasmic reticulum membrane	Hs	cellular component	90.1	9.13e-24
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component	90.1	9.13e-24
Golgi apparatus	Hs	cellular component	90.1	9.13e-24
cytosol	Hs	cellular component	36.6	0.002
cytoskeleton	Hs	cellular component	36.6	0.002
plasma membrane	Hs	cellular component	36.6	0.002
focal adhesion	Hs	cellular component	36.6	0.002
microtubule binding	Hs	molecular function	36.6	0.002
endomembrane system	Hs	cellular component	36.6	0.002
ER to Golgi transport vesicle membrane	Hs	cellular component	90.1	9.13e-24
potassium channel regulator activity	Hs	molecular function	36.6	0.002
microtubule cytoskeleton	Hs	cellular component	36.6	0.002
membrane	Hs	cellular component	36.6	0.002
kinase binding	Hs	molecular function	36.6	0.002
transport vesicle	Hs	cellular component	36.6	0.002
endoplasmic reticulum-Golgi intermediate compartment membrane	Hs	cellular component	90.1	9.13e-24
metal ion binding	Hs	molecular function	90.1	9.13e-24
calcium-dependent protein binding	Hs	molecular function	36.6	0.002
extracellular exosome	Hs	cellular component	36.6	0.002

GO (InterProScan)