Aniseed - Gene card

>
Gene 'KH2012:KH.C6.8'

Gene Card

Best human hits

GATAD1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007895

Gene Model ID

KH2012:KH.C6.8

Location

KhC6:1639017..1640143

Transcript Models and Sequences

KH2012:KH.C6.8.v1.A.ND1-1
KH2012:KH.C6.8.v1.A.nonSL4-1
KH2012:KH.C6.8.v1.A.nonSL5-1
KH2012:KH.C6.8.v1.A.SL2-1
KH2012:KH.C6.8.v1.A.SL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000022426
NCBI Reference Sequence	NM_001078443.1

Collections

Gateway full ORF

2 results

cima861249

Plate: VES64_F19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Znf_NHR/GATA	Gene3D	Zinc finger, NHR/GATA-type
Znf_GATA	ProSiteProfiles	Zinc finger, GATA-type
Znf_GATA	SMART	Zinc finger, GATA-type

GOSlim

11 results

GO Term	Annotation Origin	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
zinc ion binding	Orthology	molecular function
sequence-specific DNA binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
organelle organization	Orthology	biological process
DNA binding	Orthology	molecular function

GO (Orthology)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
zinc ion binding	Hs	molecular function
chromatin assembly	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
metal ion binding	Hs	molecular function

GO (Blast)

7 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	153	7.41e-46
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	153	7.41e-46
nucleus	Hs	cellular component	153	7.41e-46
nucleoplasm	Hs	cellular component	153	7.41e-46
zinc ion binding	Hs	molecular function	153	7.41e-46
sequence-specific DNA binding	Hs	molecular function	153	7.41e-46
metal ion binding	Hs	molecular function	153	7.41e-46

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
transcription factor activity, sequence-specific DNA binding	SMART	molecular function	0.0011
regulation of transcription, DNA-templated	Gene3D	biological process	8.3E-7
zinc ion binding	Gene3D	molecular function	8.3E-7
sequence-specific DNA binding	SMART	molecular function	0.0011