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GENE CARD

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Gene Card

Best human hits

HDGFL2; HDGFL3; PSIP1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009082

Gene Model ID

KH2012:KH.C8.447

Location

KhC8:6307738..6309616

Transcript Models and Sequences

  KH2012:KH.C8.447.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
NCBI Reference Sequence XM_002126318.4
Collections

Gateway full ORF

4 results

cien31205

Plate: VES75_L06

cien66732

Plate: VES80_E16

cien173872

Plate: VES97_N04

cien226391

Plate: VES105_I06

Gene collection 1 (N. Satoh)

2 results

citb1p13

Plate: R1CiGC28n09

citb12j2

Plate: R1CiGC30m12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
PWWP_dom Pfam PWWP domain
HIVI-bd_sf SUPERFAMILY HIV integrase-binding domain superfamily
LEDGF_IBD Pfam Lens epithelium-derived growth factor, integrase-binding domain
PWWP_dom SMART PWWP domain
TFIIS/LEDGF_dom_sf Gene3D TFIIS/LEDGF domain superfamily
PWWP_dom ProSiteProfiles PWWP domain
HDGF-rel_PWWP CDD HDGF-related, PWWP domain

GOSlim

25 results

GO Term Annotation Origin Type
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
extracellular region Blast cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Blast cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
response to oxidative stress Orthology biological process
microtubule binding Blast molecular function
tubulin binding Blast molecular function
mRNA splicing, via spliceosome Orthology biological process
response to stress Orthology biological process
cellular component organization Orthology biological process
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
intracellular transport Orthology biological process
double-stranded DNA binding Orthology molecular function
receptor binding Blast molecular function
molecular function regulator Blast molecular function
regulation of signal transduction Blast biological process
signaling receptor activity Blast molecular function

GO (Orthology)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA 5'-splice site recognition Hs biological process
DNA binding Hs molecular function
chromatin binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
response to oxidative stress Hs biological process
response to heat Hs biological process
viral process Hs biological process
positive regulation of cell growth Hs biological process
transcriptionally active chromatin Hs cellular component
nuclear transport Hs biological process
supercoiled DNA binding Hs molecular function

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
DNA binding Hs molecular function 160 2.15e-43
chromatin binding Hs molecular function 145 1.75e-37
RNA binding Hs molecular function 160 2.15e-43
protein binding Hs molecular function 160 2.15e-43
extracellular region Hs cellular component 158 9.93e-46
nucleus Hs cellular component 160 2.15e-43
nucleoplasm Hs cellular component 160 2.15e-43
cytoplasm Hs cellular component 158 9.93e-46
cytosol Hs cellular component 160 2.15e-43
microtubule binding Hs molecular function 158 9.93e-46
growth factor activity Hs molecular function 158 9.93e-46
tubulin binding Hs molecular function 158 9.93e-46
transcriptionally active chromatin Hs cellular component 160 2.15e-43
supercoiled DNA binding Hs molecular function 160 2.15e-43

GO (InterProScan)

No result

GO Term Analysis Type e-value

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