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GENE CARD

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Gene Card

Best human hits

ELP3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009256

Gene Model ID

KH2012:KH.C8.606

Location

KhC8:5153489..5155733

Transcript Models and Sequences

  KH2012:KH.C8.606.v1.A.SL1-1
KH2012:KH.C8.606.v2.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005659
NCBI Reference Sequence XM_002131633.4
Collections

Gateway full ORF

2 results

cima883711

Plate: VES69_D09

cien124705

Plate: VES89_M17

Gene collection 1 (N. Satoh)

1 result

cicl008k06

Plate: R1CiGC09e22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
GNAT_dom Pfam GNAT domain
Acyl_CoA_acyltransferase SUPERFAMILY Acyl-CoA N-acyltransferase
ELP3-like TIGRFAM Elongator complex protein 3-like
ELP3-like SFLD Elongator complex protein 3-like
Elp3/MiaB/NifB SMART Elp3/MiaB/NifB
ELP3-like PIRSF Elongator complex protein 3-like
rSAM Pfam Radical SAM
ELP3-like PANTHER Elongator complex protein 3-like
Radical_SAM_C Pfam Radical SAM, C-terminal extension
rSAM_horseshoe Gene3D Radical SAM, alpha/beta horseshoe
GNAT_dom ProSiteProfiles GNAT domain

GOSlim

28 results

GO Term Annotation Origin Type
catalytic activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
nervous system development Orthology biological process
central nervous system development Orthology biological process
transferase activity Orthology molecular function
metal ion binding Orthology molecular function
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
enzyme binding Orthology molecular function
cell migration Orthology biological process
generation of neurons Orthology biological process
organelle organization Orthology biological process
cellular protein modification process Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
protein kinase binding Orthology molecular function
protein serine/threonine kinase activity Orthology molecular function
regulation of cellular metabolic process Orthology biological process
enzyme regulator activity Orthology molecular function
intracellular part Orthology cellular component
regulation of catalytic activity Orthology biological process
protein kinase activity Orthology molecular function
cofactor binding Orthology molecular function

GO (Orthology)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
histone acetyltransferase complex Hs cellular component
RNA polymerase II core binding Hs molecular function
neuron migration Hs biological process
catalytic activity Hs molecular function
histone acetyltransferase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
nervous system development Hs biological process
central nervous system development Hs biological process
transcription elongation factor complex Hs cellular component
N-acetyltransferase activity Hs molecular function
phosphorylase kinase regulator activity Hs molecular function
H3 histone acetyltransferase activity Hs molecular function
H4 histone acetyltransferase activity Hs molecular function
histone acetylation Hs biological process
transferase activity Hs molecular function
transferase activity, transferring acyl groups Hs molecular function
positive regulation of cell migration Hs biological process
Elongator holoenzyme complex Hs cellular component
histone H3 acetylation Hs biological process
histone H4 acetylation Hs biological process
regulation of protein kinase activity Hs biological process
metal ion binding Hs molecular function
iron-sulfur cluster binding Hs molecular function

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
histone acetyltransferase complex Hs cellular component 934 0.0
RNA polymerase II core binding Hs molecular function 934 0.0
catalytic activity Hs molecular function 934 0.0
histone acetyltransferase activity Hs molecular function 934 0.0
protein binding Hs molecular function 934 0.0
nucleus Hs cellular component 934 0.0
nucleolus Hs cellular component 934 0.0
cytoplasm Hs cellular component 934 0.0
transcription elongation factor complex Hs cellular component 934 0.0
N-acetyltransferase activity Hs molecular function 934 0.0
phosphorylase kinase regulator activity Hs molecular function 934 0.0
H3 histone acetyltransferase activity Hs molecular function 934 0.0
H4 histone acetyltransferase activity Hs molecular function 934 0.0
transferase activity Hs molecular function 934 0.0
transferase activity, transferring acyl groups Hs molecular function 934 0.0
Elongator holoenzyme complex Hs cellular component 934 0.0
metal ion binding Hs molecular function 934 0.0
iron-sulfur cluster binding Hs molecular function 934 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
catalytic activity SMART molecular function 6.3E-31
iron-sulfur cluster binding SMART molecular function 6.3E-31

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