Aniseed - Gene card

Gene Card

Best human hits

CDH11; CDH12; CDH4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010294

Gene Model ID

KH2012:KH.C9.72

Location

KhC9:920230..932301

Transcript Models and Sequences

KH2012:KH.C9.72.v1.A.nonSL3-1
KH2012:KH.C9.72.v1.A.nonSL4-1
KH2012:KH.C9.72.v1.A.nonSL7-1
KH2012:KH.C9.72.v1.A.nonSL8-1
KH2012:KH.C9.72.v1.A.SL1-1
KH2012:KH.C9.72.v1.A.SL2-1
KH2012:KH.C9.72.v1.A.SL5-1
KH2012:KH.C9.72.v1.A.SL6-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000006530
NCBI Reference Sequence	NM_001128111.1
NCBI Reference Sequence	XM_009861227.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cilv005c06

Plate: R1CiGC25c16

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Cadherin_CS	ProSitePatterns	Cadherin conserved site
Cadherin-like	SUPERFAMILY	Cadherin-like
Cadherin_cytoplasmic-dom	Pfam	Cadherin, cytoplasmic domain
Cadherin	SMART	Cadherin
Cadherin	PRINTS	Cadherin
Cadherin	Pfam	Cadherin
Catenin_binding_dom_sf	Gene3D	Catenin binding domain superfamily

GOSlim

101 results

GO Term	Annotation Origin	Type
calcium ion binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
plasma membrane	Orthology	cellular component
integral component of plasma membrane	Orthology	cellular component
cell adhesion	Orthology	biological process
axon guidance	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
metal ion binding	Orthology	molecular function
extracellular exosome	Orthology	cellular component
protein binding	Orthology	molecular function
extracellular region	Orthology	cellular component
extracellular space	Orthology	cellular component
endosome	Orthology	cellular component
endoplasmic reticulum lumen	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
cytosol	Orthology	cellular component
adherens junction	Orthology	cellular component
focal adhesion	Orthology	cellular component
visual perception	Orthology	biological process
negative regulation of cell proliferation	Orthology	biological process
regulation of signal transduction	Orthology	biological process
cell surface	Orthology	cellular component
response to organic substance	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
basolateral plasma membrane	Orthology	cellular component
apical plasma membrane	Orthology	cellular component
cell migration	Orthology	biological process
enzyme binding	Orthology	molecular function
protein kinase binding	Orthology	molecular function
lamellipodium	Orthology	cellular component
cell junction	Orthology	cellular component
extracellular matrix organization	Orthology	biological process
neuron projection development	Orthology	biological process
cytoplasmic vesicle	Orthology	cellular component
wound healing	Orthology	biological process
identical protein binding	Orthology	molecular function
protein homodimerization activity	Orthology	molecular function
neuron projection	Orthology	cellular component
synapse	Orthology	cellular component
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
perinuclear region of cytoplasm	Orthology	cellular component
blood vessel morphogenesis	Orthology	biological process
cell adhesion molecule binding	Orthology	molecular function
response to stimulus	Orthology	biological process
negative regulation of canonical Wnt signaling pathway	Orthology	biological process
cellular component organization	Orthology	biological process
axonogenesis	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
angiogenesis	Orthology	biological process
Golgi apparatus part	Orthology	cellular component
membrane raft	Orthology	cellular component
plasma membrane region	Orthology	cellular component
small GTPase mediated signal transduction	Orthology	biological process
nervous system development	Orthology	biological process
cell communication	Orthology	biological process
cellular response to stress	Orthology	biological process
plasma membrane part	Orthology	cellular component
neurogenesis	Orthology	biological process
organelle	Orthology	cellular component
postsynapse	Orthology	cellular component
neuron part	Orthology	cellular component
cytoskeleton	Orthology	cellular component
macromolecular complex	Orthology	cellular component
brain development	Orthology	biological process
cell projection assembly	Orthology	biological process
anchoring junction	Orthology	cellular component
membrane organization	Orthology	biological process
organelle organization	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
cytoskeletal protein binding	Orthology	molecular function
cell periphery	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
cytoskeletal part	Orthology	cellular component
extracellular region part	Orthology	cellular component
intrinsic component of membrane	Orthology	cellular component
cell surface receptor signaling pathway	Orthology	biological process
intracellular signal transduction	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
protein phosphorylation	Orthology	biological process
cellular protein modification process	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
chemotaxis	Orthology	biological process
anatomical structure development	Orthology	biological process
cell differentiation	Orthology	biological process
cell-cell signaling	Orthology	biological process
transferase activity	Orthology	molecular function
animal organ development	Orthology	biological process
programmed cell death	Orthology	biological process
regulation of cell proliferation	Orthology	biological process
cell development	Orthology	biological process
generation of neurons	Orthology	biological process
protein localization to membrane	Orthology	biological process
signaling	Orthology	biological process
developmental process	Orthology	biological process
intracellular organelle part	Orthology	cellular component
whole membrane	Orthology	cellular component
endomembrane system	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
synapse part	Orthology	cellular component

GO (Orthology)

128 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
calcium ion binding	Hs	molecular function
cytoplasm	Hs	cellular component
plasma membrane	Hs	cellular component
integral component of plasma membrane	Hs	cellular component
cell adhesion	Hs	biological process
homophilic cell adhesion via plasma membrane adhesion molecules	Hs	biological process
heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules	Hs	biological process
axon guidance	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
adherens junction organization	Hs	biological process
positive regulation of axon extension	Hs	biological process
metal ion binding	Hs	molecular function
extracellular exosome	Hs	cellular component
mitotic cell cycle	Hs	biological process
cornified envelope	Hs	cellular component
retina homeostasis	Hs	biological process
positive regulation of endothelial cell proliferation	Hs	biological process
positive regulation of cell-matrix adhesion	Hs	biological process
sprouting angiogenesis	Hs	biological process
protein binding	Hs	molecular function
extracellular region	Hs	cellular component
extracellular space	Hs	cellular component
endosome	Hs	cellular component
endoplasmic reticulum lumen	Hs	cellular component
Golgi apparatus	Hs	cellular component
trans-Golgi network	Hs	cellular component
cytosol	Hs	cellular component
caveola	Hs	cellular component
cell-cell junction	Hs	cellular component
adherens junction	Hs	cellular component
cell-cell adherens junction	Hs	cellular component
fascia adherens	Hs	cellular component
gap junction	Hs	cellular component
focal adhesion	Hs	cellular component
negative regulation of cell adhesion	Hs	biological process
Rho protein signal transduction	Hs	biological process
synapse assembly	Hs	biological process
visual perception	Hs	biological process
beta-catenin binding	Hs	molecular function
negative regulation of cell proliferation	Hs	biological process
cellular response to starvation	Hs	biological process
response to toxic substance	Hs	biological process
external side of plasma membrane	Hs	cellular component
cytoplasmic side of plasma membrane	Hs	cellular component
regulation of signal transduction	Hs	biological process
cell surface	Hs	cellular component
glial cell differentiation	Hs	biological process
response to organic substance	Hs	biological process
positive regulation of gene expression	Hs	biological process
postsynaptic density	Hs	cellular component
intercalated disc	Hs	cellular component
actin cytoskeleton	Hs	cellular component
basolateral plasma membrane	Hs	cellular component
apical plasma membrane	Hs	cellular component
lateral plasma membrane	Hs	cellular component
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Hs	biological process
catenin complex	Hs	cellular component
cell migration	Hs	biological process
flotillin complex	Hs	cellular component
Rac protein signal transduction	Hs	biological process
enzyme binding	Hs	molecular function
protein kinase binding	Hs	molecular function
protein phosphatase binding	Hs	molecular function
telencephalon development	Hs	biological process
pituitary gland development	Hs	biological process
cerebral cortex development	Hs	biological process
negative regulation of cell-cell adhesion	Hs	biological process
lamellipodium	Hs	cellular component
lamellipodium assembly	Hs	biological process
cell junction	Hs	cellular component
desmosome	Hs	cellular component
regulation of endocytosis	Hs	biological process
low-density lipoprotein particle binding	Hs	molecular function
extracellular matrix organization	Hs	biological process
positive regulation of cell migration	Hs	biological process
ankyrin binding	Hs	molecular function
cortical actin cytoskeleton	Hs	cellular component
extracellular matrix	Hs	cellular component
neuron projection development	Hs	biological process
anchored component of membrane	Hs	cellular component
cytoplasmic vesicle	Hs	cellular component
neuromuscular junction	Hs	cellular component
GTPase activating protein binding	Hs	molecular function
regulation of epidermal growth factor receptor signaling pathway	Hs	biological process
wound healing	Hs	biological process
sarcolemma	Hs	cellular component
response to drug	Hs	biological process
identical protein binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
positive regulation of transcription factor import into nucleus	Hs	biological process
neuron projection	Hs	cellular component
apical junction complex	Hs	cellular component
positive regulation of MAPK cascade	Hs	biological process
endothelial cell migration	Hs	biological process
positive regulation of insulin-like growth factor receptor signaling pathway	Hs	biological process
post-translational protein modification	Hs	biological process
cell-cell adhesion mediated by cadherin	Hs	biological process
plasma membrane raft	Hs	cellular component
synapse	Hs	cellular component
alpha-catenin binding	Hs	molecular function
gamma-catenin binding	Hs	molecular function
cadherin binding	Hs	molecular function
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
blood vessel morphogenesis	Hs	biological process
brain morphogenesis	Hs	biological process
cell adhesion molecule binding	Hs	molecular function
positive regulation of calcium-mediated signaling	Hs	biological process
response to stimulus	Hs	biological process
positive regulation of positive chemotaxis	Hs	biological process
striated muscle cell differentiation	Hs	biological process
localization within membrane	Hs	biological process
adiponectin binding	Hs	molecular function
canonical Wnt signaling pathway	Hs	biological process
cornification	Hs	biological process
regulation of oligodendrocyte progenitor proliferation	Hs	biological process
lipoprotein particle binding	Hs	molecular function
protein localization to plasma membrane	Hs	biological process
cell adhesive protein binding involved in bundle of His cell-Purkinje myocyte communication	Hs	molecular function
regulation of heart rate by cardiac conduction	Hs	biological process
negative regulation of canonical Wnt signaling pathway	Hs	biological process
neuroligin clustering involved in postsynaptic membrane assembly	Hs	biological process
neuronal stem cell population maintenance	Hs	biological process
cell-cell adhesion	Hs	biological process
ficolin-1-rich granule membrane	Hs	cellular component
positive regulation of synaptic vesicle clustering	Hs	biological process

GO (Blast)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
calcium ion binding	Hs	molecular function	324	1.03e-97
cytoplasm	Hs	cellular component	309	3.43e-93
plasma membrane	Hs	cellular component	324	1.03e-97
integral component of plasma membrane	Hs	cellular component	324	1.03e-97
membrane	Hs	cellular component	324	1.03e-97
integral component of membrane	Hs	cellular component	324	1.03e-97
metal ion binding	Hs	molecular function	324	1.03e-97
extracellular exosome	Hs	cellular component	309	3.43e-93

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
calcium ion binding	Pfam	molecular function	1.3E-47
plasma membrane	ProSitePatterns	cellular component
cell adhesion	ProSitePatterns	biological process
homophilic cell adhesion via plasma membrane adhesion molecules	Pfam	biological process	1.3E-47
membrane	SUPERFAMILY	cellular component	9.42E-20