Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 
  3. > 
  4. > 

Gene Card

Best human hits

STUB1; UBE4A; UBE4B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00010379

Gene Model ID

KH2012:KH.C9.797

Location

KhC9:321057..338557

Transcript Models and Sequences

  KH2012:KH.C9.797.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000006881
NCBI Reference Sequence XM_002122706.2
Collections

Gateway full ORF

2 results

cien107513

Plate: VES87_F01

cien184319

Plate: VES98_K17

Gene collection 1 (N. Satoh)

2 results

cieg044e06

Plate: R1CiGC22l05

citb039l15

Plate: R1CiGC32b22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Ubox_domain ProSiteProfiles U box domain
Ub_conjug_fac_E4_core Pfam Ubiquitin conjugation factor E4, core
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
Ubox_domain SMART U box domain
Ubox_domain Pfam U box domain

GOSlim

26 results

GO Term Annotation Origin Type
protein polyubiquitination Orthology biological process
ubiquitin-protein transferase activity Orthology molecular function
protein binding Orthology molecular function
ATP binding Blast molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
endoplasmic reticulum Blast cellular component
cytosol Blast cellular component
protein ubiquitination Orthology biological process
transferase activity Orthology molecular function
enzyme binding Blast molecular function
kinase binding Blast molecular function
ubiquitin protein ligase binding Blast molecular function
protein homodimerization activity Blast molecular function
extracellular exosome Blast cellular component
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
proteolysis Orthology biological process
cellular response to stress Orthology biological process
response to organic substance Orthology biological process
receptor binding Blast molecular function
organelle part Blast cellular component
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear part Blast cellular component

GO (Orthology)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
ubiquitin ligase complex Hs cellular component
protein polyubiquitination Hs biological process
ubiquitin-protein transferase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
ubiquitin-dependent protein catabolic process Hs biological process
protein ubiquitination Hs biological process
transferase activity Hs molecular function
ubiquitin-dependent ERAD pathway Hs biological process
ubiquitin-ubiquitin ligase activity Hs molecular function

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
ubiquitin ligase complex Hs cellular component 583 0.0
G-protein coupled receptor binding Hs molecular function 48.9 7.17e-06
ubiquitin-protein transferase activity Hs molecular function 583 0.0
protein binding Hs molecular function 583 0.0
ATP binding Hs molecular function 208 7.55e-55
nucleus Hs cellular component 583 0.0
nucleoplasm Hs cellular component 48.9 7.17e-06
cytoplasm Hs cellular component 583 0.0
endoplasmic reticulum Hs cellular component 48.9 7.17e-06
cytosol Hs cellular component 48.9 7.17e-06
transferase activity Hs molecular function 583 0.0
enzyme binding Hs molecular function 208 7.55e-55
kinase binding Hs molecular function 48.9 7.17e-06
Z disc Hs cellular component 48.9 7.17e-06
Hsp70 protein binding Hs molecular function 48.9 7.17e-06
protein binding, bridging Hs molecular function 48.9 7.17e-06
TPR domain binding Hs molecular function 48.9 7.17e-06
ubiquitin conjugating enzyme complex Hs cellular component 48.9 7.17e-06
ubiquitin protein ligase binding Hs molecular function 48.9 7.17e-06
ubiquitin-ubiquitin ligase activity Hs molecular function 583 0.0
nuclear inclusion body Hs cellular component 48.9 7.17e-06
protein homodimerization activity Hs molecular function 48.9 7.17e-06
SMAD binding Hs molecular function 48.9 7.17e-06
ATPase binding Hs molecular function 208 7.55e-55
misfolded protein binding Hs molecular function 48.9 7.17e-06
Hsp90 protein binding Hs molecular function 48.9 7.17e-06
ubiquitin protein ligase activity Hs molecular function 208 7.55e-55
extracellular exosome Hs cellular component 48.9 7.17e-06
ubiquitin protein ligase activity involved in ERAD pathway Hs molecular function 48.9 7.17e-06

GO (InterProScan)

5 results

GO Term Analysis Type e-value
ubiquitin ligase complex Pfam cellular component 1.7E-125
ubiquitin-protein transferase activity Pfam molecular function 2.8E-28
ubiquitin-dependent protein catabolic process Pfam biological process 1.7E-125
protein ubiquitination Pfam biological process 1.7E-125
ubiquitin-ubiquitin ligase activity Pfam molecular function 1.7E-125

Back to Top