Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

KATNB1; TAF5; TAF5L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011289

Gene Model ID

KH2012:KH.L147.10

Location

KhL147:231404..240450

Transcript Models and Sequences

  KH2012:KH.L147.10.v1.A.ND1-2
KH2012:KH.L147.10.v1.A.nonSL4-2
KH2012:KH.L147.10.v1.A.SL2-2
KH2012:KH.L147.10.v1.A.SL3-2
KH2012:KH.L147.10.v1.A.SL5-2
KH2012:KH.L147.10.v2.A.ND1-1
KH2012:KH.L147.10.v2.A.nonSL4-1
KH2012:KH.L147.10.v2.A.SL2-1
KH2012:KH.L147.10.v2.A.SL3-1
KH2012:KH.L147.10.v2.A.SL5-1

External Database Gene Card

External database links

3 results

Database Gene ID
ENSEMBL ENSCING00000004104
NCBI Reference Sequence XM_002120587.3
NCBI Reference Sequence XR_001975131.1
Collections

Gateway full ORF

2 results

cien51593

Plate: VES78_P07

cien145880

Plate: VES93_P01

Gene collection 1 (N. Satoh)

1 result

cicl024i02

Plate: R1CiGC11b01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
WD40_repeat ProSiteProfiles WD40 repeat
WD40_repeat Pfam WD40 repeat
WD40_repeat_dom ProSiteProfiles WD40-repeat-containing domain
TFIID_NTD2_sf Gene3D TFIID subunit TAF5, NTD2 domain superfamily
TFIID_NTD2 Pfam TFIID subunit TAF5, NTD2 domain
WD40_repeat_CS ProSitePatterns WD40 repeat, conserved site
WD40_repeat_dom_sf SUPERFAMILY WD40-repeat-containing domain superfamily
WD40/YVTN_repeat-like_dom_sf Gene3D WD40/YVTN repeat-like-containing domain superfamily
LisH ProSiteProfiles LIS1 homology motif
TFIID_NTD2_sf SUPERFAMILY TFIID subunit TAF5, NTD2 domain superfamily
WD40_repeat SMART WD40 repeat
TFIID_NTD2 CDD TFIID subunit TAF5, NTD2 domain
G-protein_beta_WD-40_rep PRINTS G-protein beta WD-40 repeat

GOSlim

39 results

GO Term Annotation Origin Type
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
centrosome Blast cellular component
microtubule organizing center Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
microtubule Blast cellular component
plasma membrane Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
microtubule binding Blast molecular function
microtubule cytoskeleton Blast cellular component
membrane Blast cellular component
nuclear speck Orthology cellular component
axon Blast cellular component
midbody Blast cellular component
identical protein binding Blast molecular function
neuronal cell body Blast cellular component
transcription regulatory region DNA binding Blast molecular function
protein heterodimerization activity Blast molecular function
protein dimerization activity Blast molecular function
organelle organization Orthology biological process
transferase activity Orthology molecular function
cellular protein modification process Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Blast cellular component
cytoskeletal part Blast cellular component
microtubule-based process Blast biological process
nucleoside-triphosphatase activity Blast molecular function
cell projection part Blast cellular component
macromolecular complex binding Blast molecular function

GO (Orthology)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
histone acetyltransferase activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
nuclear speck Hs cellular component
STAGA complex Hs cellular component
transcription factor TFTC complex Hs cellular component
cytoplasmic ribonucleoprotein granule Hs cellular component
histone H3 acetylation Hs biological process

GO (Blast)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 239 6.64e-69
spindle pole Hs cellular component 112 6.26e-26
transcription factor activity, sequence-specific DNA binding Hs molecular function 312 1.90e-98
transcription coactivator activity Hs molecular function 312 1.90e-98
histone acetyltransferase activity Hs molecular function 312 1.90e-98
protein binding Hs molecular function 312 1.90e-98
nucleus Hs cellular component 312 1.90e-98
nucleoplasm Hs cellular component 239 6.64e-69
transcription factor TFIID complex Hs cellular component 239 6.64e-69
cytoplasm Hs cellular component 112 6.26e-26
centrosome Hs cellular component 112 6.26e-26
microtubule organizing center Hs cellular component 112 6.26e-26
spindle Hs cellular component 112 6.26e-26
cytosol Hs cellular component 112 6.26e-26
cytoskeleton Hs cellular component 112 6.26e-26
microtubule Hs cellular component 112 6.26e-26
plasma membrane Hs cellular component 112 6.26e-26
microtubule binding Hs molecular function 112 6.26e-26
katanin complex Hs cellular component 112 6.26e-26
microtubule-severing ATPase activity Hs molecular function 112 6.26e-26
actin cytoskeleton Hs cellular component 239 6.64e-69
microtubule cytoskeleton Hs cellular component 112 6.26e-26
membrane Hs cellular component 112 6.26e-26
nuclear speck Hs cellular component 312 1.90e-98
axon Hs cellular component 112 6.26e-26
growth cone Hs cellular component 112 6.26e-26
midbody Hs cellular component 112 6.26e-26
STAGA complex Hs cellular component 312 1.90e-98
transcription factor TFTC complex Hs cellular component 312 1.90e-98
cytoplasmic ribonucleoprotein granule Hs cellular component 312 1.90e-98
identical protein binding Hs molecular function 239 6.64e-69
neuronal cell body Hs cellular component 112 6.26e-26
transcription regulatory region DNA binding Hs molecular function 239 6.64e-69
protein heterodimerization activity Hs molecular function 112 6.26e-26
protein dimerization activity Hs molecular function 239 6.64e-69
dynein complex binding Hs molecular function 112 6.26e-26

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 9.94E-65

Back to Top