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Gene Card

Best human hits

ACTA2; ACTB; ACTG1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011581

Gene Model ID

KH2012:KH.L154.40

Location

KhL154:188518..190037

Transcript Models and Sequences

  KH2012:KH.L154.40.v1.A.ND1-1

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Actin Pfam Actin family
Actin PRINTS Actin family
Actin_CS ProSitePatterns Actin, conserved site
Actin SMART Actin family
Actin PANTHER Actin family
Actin/actin-like_CS ProSitePatterns Actin/actin-like conserved site

GOSlim

40 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
extracellular space Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
membrane Blast cellular component
protein kinase binding Blast molecular function
lamellipodium Blast cellular component
ubiquitin protein ligase binding Blast molecular function
vesicle Blast cellular component
macromolecular complex Blast cellular component
identical protein binding Blast molecular function
myelin sheath Blast cellular component
cell body Blast cellular component
extracellular exosome Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
organelle organization Blast biological process
structural molecule activity Blast molecular function
cytoskeletal part Blast cellular component
cytoskeletal protein binding Blast molecular function
cytoplasmic part Blast cellular component
plasma membrane region Blast cellular component
cell projection Blast cellular component
organelle part Blast cellular component
transcription factor binding Blast molecular function
chromatin binding Blast molecular function
macromolecular complex binding Blast molecular function
DNA binding Blast molecular function
nucleoplasm part Blast cellular component
cytoplasmic vesicle Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

43 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 470 4.88e-168
nuclear chromatin Hs cellular component 470 4.88e-168
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 470 4.88e-168
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 470 4.88e-168
structural constituent of cytoskeleton Hs molecular function 470 4.88e-168
protein binding Hs molecular function 470 4.88e-168
profilin binding Hs molecular function 468 3.28e-167
ATP binding Hs molecular function 470 4.88e-168
extracellular space Hs cellular component 470 4.88e-168
nucleus Hs cellular component 470 4.88e-168
nucleoplasm Hs cellular component 470 4.88e-168
cytoplasm Hs cellular component 470 4.88e-168
cytosol Hs cellular component 470 4.88e-168
cytoskeleton Hs cellular component 470 4.88e-168
actin filament Hs cellular component 468 3.28e-167
plasma membrane Hs cellular component 470 4.88e-168
focal adhesion Hs cellular component 470 4.88e-168
actin cytoskeleton Hs cellular component 470 4.88e-168
membrane Hs cellular component 470 4.88e-168
kinesin binding Hs molecular function 470 4.88e-168
protein kinase binding Hs molecular function 470 4.88e-168
myofibril Hs cellular component 468 3.28e-167
lamellipodium Hs cellular component 447 4.87e-159
filopodium Hs cellular component 447 4.87e-159
smooth muscle contractile fiber Hs cellular component 447 4.87e-159
intracellular ribonucleoprotein complex Hs cellular component 470 4.88e-168
Tat protein binding Hs molecular function 470 4.88e-168
nucleosomal DNA binding Hs molecular function 470 4.88e-168
ubiquitin protein ligase binding Hs molecular function 468 3.28e-167
filamentous actin Hs cellular component 468 3.28e-167
vesicle Hs cellular component 470 4.88e-168
macromolecular complex Hs cellular component 470 4.88e-168
NuA4 histone acetyltransferase complex Hs cellular component 470 4.88e-168
cytoplasmic ribonucleoprotein granule Hs cellular component 470 4.88e-168
identical protein binding Hs molecular function 470 4.88e-168
myelin sheath Hs cellular component 468 3.28e-167
cell body Hs cellular component 447 4.87e-159
phagocytic vesicle Hs cellular component 468 3.28e-167
nitric-oxide synthase binding Hs molecular function 470 4.88e-168
extracellular exosome Hs cellular component 470 4.88e-168
blood microparticle Hs cellular component 470 4.88e-168
dense body Hs cellular component 470 4.88e-168
structural constituent of postsynaptic actin cytoskeleton Hs molecular function 470 4.88e-168

GO (InterProScan)

No result

GO Term Analysis Type e-value

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