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  1. Gene 'KH2012:KH.L154.40'

Gene Card

Best human hits

ACTA2; ACTB; ACTG1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00011581

Gene Model ID

KH2012:KH.L154.40

Location

KhL154:188518..190037

Transcript Models and Sequences

  KH2012:KH.L154.40.v1.A.ND1-1

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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    Gene Annotations

    InterPro

    6 results

    IPR Term Analysis Definition
    Actin Pfam Actin family
    Actin PRINTS Actin family
    Actin_CS ProSitePatterns Actin, conserved site
    Actin SMART Actin family
    Actin PANTHER Actin family
    Actin/actin-like_CS ProSitePatterns Actin/actin-like conserved site

    GOSlim

    40 results

    GO Term Annotation Origin Type
    nucleotide binding Blast molecular function
    RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
    protein binding Blast molecular function
    ATP binding Blast molecular function
    extracellular space Blast cellular component
    nucleus Blast cellular component
    nucleoplasm Blast cellular component
    cytoplasm Blast cellular component
    cytosol Blast cellular component
    cytoskeleton Blast cellular component
    plasma membrane Blast cellular component
    focal adhesion Blast cellular component
    membrane Blast cellular component
    protein kinase binding Blast molecular function
    lamellipodium Blast cellular component
    ubiquitin protein ligase binding Blast molecular function
    vesicle Blast cellular component
    macromolecular complex Blast cellular component
    identical protein binding Blast molecular function
    myelin sheath Blast cellular component
    cell body Blast cellular component
    extracellular exosome Blast cellular component
    intracellular non-membrane-bounded organelle Blast cellular component
    nuclear lumen Blast cellular component
    RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
    organelle organization Blast biological process
    structural molecule activity Blast molecular function
    cytoskeletal part Blast cellular component
    cytoskeletal protein binding Blast molecular function
    cytoplasmic part Blast cellular component
    plasma membrane region Blast cellular component
    cell projection Blast cellular component
    organelle part Blast cellular component
    transcription factor binding Blast molecular function
    chromatin binding Blast molecular function
    macromolecular complex binding Blast molecular function
    DNA binding Blast molecular function
    nucleoplasm part Blast cellular component
    cytoplasmic vesicle Blast cellular component
    enzyme binding Blast molecular function

    GO (Orthology)

    No result

    GO Term SpeciesCe = Caenorhabditis elegans
    Dr = Danio rerio
    Dm = Drosophila melanogaster
    Gg = Gallus gallus
    Hs = Homo sapiens
    Mm = Mus musculus
    Sc = Saccharomyces cerevisiae    		 Type

    GO (Blast)

    43 results

    GO Term SpeciesCe = Caenorhabditis elegans
    Dr = Danio rerio
    Dm = Drosophila melanogaster
    Gg = Gallus gallus
    Hs = Homo sapiens
    Mm = Mus musculus
    Sc = Saccharomyces cerevisiae    		 Type Score E-value
    nucleotide binding Hs molecular function 470 4.88e-168
    nuclear chromatin Hs cellular component 470 4.88e-168
    RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 470 4.88e-168
    RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 470 4.88e-168
    structural constituent of cytoskeleton Hs molecular function 470 4.88e-168
    protein binding Hs molecular function 470 4.88e-168
    profilin binding Hs molecular function 468 3.28e-167
    ATP binding Hs molecular function 470 4.88e-168
    extracellular space Hs cellular component 470 4.88e-168
    nucleus Hs cellular component 470 4.88e-168
    nucleoplasm Hs cellular component 470 4.88e-168
    cytoplasm Hs cellular component 470 4.88e-168
    cytosol Hs cellular component 470 4.88e-168
    cytoskeleton Hs cellular component 470 4.88e-168
    actin filament Hs cellular component 468 3.28e-167
    plasma membrane Hs cellular component 470 4.88e-168
    focal adhesion Hs cellular component 470 4.88e-168
    actin cytoskeleton Hs cellular component 470 4.88e-168
    membrane Hs cellular component 470 4.88e-168
    kinesin binding Hs molecular function 470 4.88e-168
    protein kinase binding Hs molecular function 470 4.88e-168
    myofibril Hs cellular component 468 3.28e-167
    lamellipodium Hs cellular component 447 4.87e-159
    filopodium Hs cellular component 447 4.87e-159
    smooth muscle contractile fiber Hs cellular component 447 4.87e-159
    intracellular ribonucleoprotein complex Hs cellular component 470 4.88e-168
    Tat protein binding Hs molecular function 470 4.88e-168
    nucleosomal DNA binding Hs molecular function 470 4.88e-168
    ubiquitin protein ligase binding Hs molecular function 468 3.28e-167
    filamentous actin Hs cellular component 468 3.28e-167
    vesicle Hs cellular component 470 4.88e-168
    macromolecular complex Hs cellular component 470 4.88e-168
    NuA4 histone acetyltransferase complex Hs cellular component 470 4.88e-168
    cytoplasmic ribonucleoprotein granule Hs cellular component 470 4.88e-168
    identical protein binding Hs molecular function 470 4.88e-168
    myelin sheath Hs cellular component 468 3.28e-167
    cell body Hs cellular component 447 4.87e-159
    phagocytic vesicle Hs cellular component 468 3.28e-167
    nitric-oxide synthase binding Hs molecular function 470 4.88e-168
    extracellular exosome Hs cellular component 470 4.88e-168
    blood microparticle Hs cellular component 470 4.88e-168
    dense body Hs cellular component 470 4.88e-168
    structural constituent of postsynaptic actin cytoskeleton Hs molecular function 470 4.88e-168

    GO (InterProScan)

    No result

    GO Term Analysis Type e-value

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