Aniseed - Gene card

Gene Card

Best human hits

VPS72

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012405

Gene Model ID

KH2012:KH.L37.41

Location

KhL37:47927..50269

Transcript Models and Sequences

KH2012:KH.L37.41.v1.A.nonSL3-1
KH2012:KH.L37.41.v1.A.SL1-1
KH2012:KH.L37.41.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000014430
NCBI Reference Sequence	NM_001078364.1
NCBI Reference Sequence	XM_018815913.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cigd024l23

Plate: R1CiGC41k10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Vps72/YL1_C	SMART	Vps72/YL1, C-terminal
Vps72/YL1	Pfam	Vps72/YL1 family
Vps72/YL1	PANTHER	Vps72/YL1 family
Vps72/YL1_C	Pfam	Vps72/YL1, C-terminal

GOSlim

11 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
nuclear speck	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organelle organization	Orthology	biological process
developmental process	Orthology	biological process

GO (Orthology)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
chromatin organization	Hs	biological process
chromatin remodeling	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
nuclear speck	Hs	cellular component
macromolecular complex	Hs	cellular component
somatic stem cell population maintenance	Hs	biological process
histone binding	Hs	molecular function
histone exchange	Hs	biological process

GO (Blast)

7 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
DNA binding	Hs	molecular function	191	6.32e-58
protein binding	Hs	molecular function	191	6.32e-58
nucleus	Hs	cellular component	191	6.32e-58
nucleoplasm	Hs	cellular component	191	6.32e-58
nuclear speck	Hs	cellular component	191	6.32e-58
macromolecular complex	Hs	cellular component	191	6.32e-58
histone binding	Hs	molecular function	191	6.32e-58

GO (InterProScan)