Aniseed - Gene card

Gene 'KH2012:KH.L41.49'

Gene Card

Best human hits

RPL6

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012602

Gene Model ID

KH2012:KH.L41.49

Location

KhL41:112744..115473

Transcript Models and Sequences

KH2012:KH.L41.49.v1.A.SL2-1
KH2012:KH.L41.49.v2.A.nonSL1-1
KH2012:KH.L41.49.v2.A.nonSL3-1
KH2012:KH.L41.49.v2.A.nonSL4-1
KH2012:KH.L41.49.v2.A.nonSL5-1
KH2012:KH.L41.49.v2.A.nonSL7-1
KH2012:KH.L41.49.v2.A.nonSL8-1
KH2012:KH.L41.49.v3.A.nonSL1-1
KH2012:KH.L41.49.v3.A.nonSL3-1
KH2012:KH.L41.49.v3.A.nonSL4-1
KH2012:KH.L41.49.v3.A.nonSL5-1
KH2012:KH.L41.49.v3.A.nonSL6-1
KH2012:KH.L41.49.v3.A.nonSL7-1
KH2012:KH.L41.49.v3.A.nonSL8-1

External Database Gene Card

External database links

5 results

Database	Gene ID
ENSEMBL	ENSCING00000000730
NCBI Reference Sequence	XM_002129522.4
NCBI Reference Sequence	XM_009863365.2
NCBI Reference Sequence	XM_009863366.2
NCBI Reference Sequence	XM_009863367.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl017c18

Plate: R1CiGC10b15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Rib_L2_dom2	Gene3D	Ribosomal protein L2, domain 2
Translation_prot_SH3-like_sf	SUPERFAMILY	Translation protein SH3-like domain superfamily
60S_ribosomal_L6E	PANTHER	60S ribosomal protein L6E
60S_ribosomal_L6E	Pfam	60S ribosomal protein L6E
Ribosomal_L6_N	Pfam	Ribosomal protein L6, N-terminal

GOSlim

21 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
regulation of transcription, DNA-templated	Orthology	biological process
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cell adhesion molecule binding	Orthology	molecular function

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal large subunit assembly	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
rough endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
regulation of transcription, DNA-templated	Hs	biological process
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
membrane	Hs	cellular component
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
cytoplasmic ribonucleoprotein granule	Hs	cellular component
polysomal ribosome	Hs	cellular component
cadherin binding	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
DNA binding	Hs	molecular function	280	3.62e-95
RNA binding	Hs	molecular function	280	3.62e-95
structural constituent of ribosome	Hs	molecular function	280	3.62e-95
intracellular	Hs	cellular component	280	3.62e-95
nucleus	Hs	cellular component	280	3.62e-95
cytoplasm	Hs	cellular component	280	3.62e-95
endoplasmic reticulum	Hs	cellular component	280	3.62e-95
rough endoplasmic reticulum	Hs	cellular component	280	3.62e-95
cytosol	Hs	cellular component	280	3.62e-95
ribosome	Hs	cellular component	280	3.62e-95
focal adhesion	Hs	cellular component	280	3.62e-95
membrane	Hs	cellular component	280	3.62e-95
cytosolic large ribosomal subunit	Hs	cellular component	280	3.62e-95
intracellular ribonucleoprotein complex	Hs	cellular component	280	3.62e-95
cytoplasmic ribonucleoprotein granule	Hs	cellular component	280	3.62e-95
polysomal ribosome	Hs	cellular component	280	3.62e-95
cadherin binding	Hs	molecular function	280	3.62e-95

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	1.2E-103
intracellular	PANTHER	cellular component	1.2E-103
ribosome	PANTHER	cellular component	1.2E-103
translation	PANTHER	biological process	1.2E-103