Aniseed - Gene card

Gene Card

Best human hits

PSMC1; PSMC4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012713

Gene Model ID

KH2012:KH.L5.2

Location

KhL5:83607..89072

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000003550
NCBI Reference Sequence	XM_002127830.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl061h02

Plate: R1CiGC15i12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
ATPase_AAA_core	Pfam	ATPase, AAA-type, core
26S_subunit_4	PANTHER	26S Proteasome regulatory subunit 4
ATPase_AAA_CS	ProSitePatterns	ATPase, AAA-type, conserved site
AAA+_ATPase	SMART	AAA+ ATPase domain
26S_Psome_P45-like	TIGRFAM	26S proteasome regulatory subunit P45-like
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase

GOSlim

43 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
protein polyubiquitination	Orthology	biological process
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
protein folding	Orthology	biological process
proteolysis	Orthology	biological process
membrane	Orthology	cellular component
hydrolase activity	Orthology	molecular function
synapse	Blast	cellular component
transmembrane transport	Orthology	biological process
negative regulation of canonical Wnt signaling pathway	Orthology	biological process
positive regulation of canonical Wnt signaling pathway	Orthology	biological process
intracellular signal transduction	Orthology	biological process
protein phosphorylation	Orthology	biological process
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
G2/M transition of mitotic cell cycle	Orthology	biological process
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
nucleoside-triphosphatase activity	Orthology	molecular function
transcription factor binding	Orthology	molecular function
protein metabolic process	Orthology	biological process
cellular response to stress	Orthology	biological process
response to organic substance	Orthology	biological process
nuclear lumen	Orthology	cellular component
cytokine-mediated signaling pathway	Orthology	biological process
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
cell surface receptor signaling pathway	Orthology	biological process
immune response	Orthology	biological process
mRNA catabolic process	Orthology	biological process
cellular protein modification process	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
transcription initiation from RNA polymerase II promoter	Orthology	biological process
cell-cell signaling	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
animal organ development	Orthology	biological process
negative regulation of cell death	Orthology	biological process
immune system process	Orthology	biological process
cell differentiation	Orthology	biological process

GO (Orthology)

45 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
MAPK cascade	Hs	biological process
nucleotide binding	Hs	molecular function
protein polyubiquitination	Hs	biological process
proteasome complex	Hs	cellular component
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
proteasome regulatory particle	Hs	cellular component
protein folding	Hs	biological process
proteasome regulatory particle, base subcomplex	Hs	cellular component
negative regulation of G2/M transition of mitotic cell cycle	Hs	biological process
membrane	Hs	cellular component
protein deubiquitination	Hs	biological process
hydrolase activity	Hs	molecular function
ATPase activity	Hs	molecular function
TBP-class protein binding	Hs	molecular function
proteasome accessory complex	Hs	cellular component
protein catabolic process	Hs	biological process
ubiquitin-dependent ERAD pathway	Hs	biological process
anaphase-promoting complex-dependent catabolic process	Hs	biological process
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Hs	biological process
nuclear proteasome complex	Hs	cellular component
cytosolic proteasome complex	Hs	cellular component
tumor necrosis factor-mediated signaling pathway	Hs	biological process
proteasome-activating ATPase activity	Hs	molecular function
NIK/NF-kappaB signaling	Hs	biological process
Fc-epsilon receptor signaling pathway	Hs	biological process
proteasome-mediated ubiquitin-dependent protein catabolic process	Hs	biological process
regulation of mRNA stability	Hs	biological process
post-translational protein modification	Hs	biological process
positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	Hs	biological process
T cell receptor signaling pathway	Hs	biological process
negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	Hs	biological process
transmembrane transport	Hs	biological process
Wnt signaling pathway, planar cell polarity pathway	Hs	biological process
interleukin-1-mediated signaling pathway	Hs	biological process
negative regulation of canonical Wnt signaling pathway	Hs	biological process
positive regulation of canonical Wnt signaling pathway	Hs	biological process
negative regulation of neuron death	Hs	biological process
positive regulation of proteasomal protein catabolic process	Hs	biological process
regulation of hematopoietic stem cell differentiation	Hs	biological process

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	753	0.0
proteasome complex	Hs	cellular component	753	0.0
RNA binding	Hs	molecular function	753	0.0
protein binding	Hs	molecular function	753	0.0
ATP binding	Hs	molecular function	753	0.0
nucleus	Hs	cellular component	753	0.0
nucleoplasm	Hs	cellular component	753	0.0
cytoplasm	Hs	cellular component	753	0.0
cytosol	Hs	cellular component	753	0.0
proteasome regulatory particle	Hs	cellular component	753	0.0
proteasome regulatory particle, base subcomplex	Hs	cellular component	753	0.0
membrane	Hs	cellular component	753	0.0
inclusion body	Hs	cellular component	393	1.00e-134
hydrolase activity	Hs	molecular function	753	0.0
ATPase activity	Hs	molecular function	753	0.0
TBP-class protein binding	Hs	molecular function	753	0.0
proteasome accessory complex	Hs	cellular component	753	0.0
nuclear proteasome complex	Hs	cellular component	753	0.0
cytosolic proteasome complex	Hs	cellular component	753	0.0
proteasome-activating ATPase activity	Hs	molecular function	753	0.0
synapse	Hs	cellular component	393	1.00e-134

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
ATP binding	Pfam	molecular function	2.9E-43
cytoplasm	TIGRFAM	cellular component	7.4E-136
hydrolase activity	TIGRFAM	molecular function	7.4E-136
protein catabolic process	TIGRFAM	biological process	7.4E-136
proteasome-activating ATPase activity	PANTHER	molecular function	3.9E-256