Login
Help

GENE CARD

Submit your Data

  1. > 
  2. Gene 'Phfumi.CG.MTP2014.S1...' > 
  3. > 

Gene Card

Best human hits

FUCA1; FUCA2

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00012946

Gene Model ID

KH2012:KH.L65.9

Location

KhL65:170452..174260

Transcript Models and Sequences

  KH2012:KH.L65.9.v1.A.SL1-1
KH2012:KH.L65.9.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005740
NCBI Reference Sequence XM_002124204.4
Collections

Gateway full ORF

2 results

cien73944

Plate: VES81_J24

cima882133

Plate: VES69_F01

Gene collection 1 (N. Satoh)

1 result

ciad039k05

Plate: R1CiGC04g22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
FUC_metazoa-typ PRINTS Alpha-L-fucosidase, metazoa-type
Glyco_hydro_29_CS ProSitePatterns Glycoside hydrolase, family 29, conserved site
Glyco_hydro_29 SMART Glycoside hydrolase, family 29
FUC_metazoa-typ PIRSF Alpha-L-fucosidase, metazoa-type
Glyco_hydro_29 PANTHER Glycoside hydrolase, family 29
Glyco_hydro_29 Pfam Glycoside hydrolase, family 29
Glycoside_hydrolase_SF SUPERFAMILY Glycoside hydrolase superfamily

GOSlim

13 results

GO Term Annotation Origin Type
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
cytoplasm Blast cellular component
lysosome Blast cellular component
endoplasmic reticulum lumen Blast cellular component
hydrolase activity Blast molecular function
extracellular exosome Blast cellular component
cytoplasmic vesicle Blast cellular component
vacuolar part Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component
organic substance metabolic process InterProScan biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
alpha-L-fucosidase activity Hs molecular function 478 1.18e-167
protein binding Hs molecular function 478 1.18e-167
extracellular region Hs cellular component 478 1.18e-167
extracellular space Hs cellular component 478 1.18e-167
cytoplasm Hs cellular component 471 4.67e-165
lysosome Hs cellular component 471 4.67e-165
endoplasmic reticulum lumen Hs cellular component 478 1.18e-167
hydrolase activity Hs molecular function 478 1.18e-167
hydrolase activity, acting on glycosyl bonds Hs molecular function 478 1.18e-167
azurophil granule lumen Hs cellular component 478 1.18e-167
lysosomal lumen Hs cellular component 471 4.67e-165
extracellular exosome Hs cellular component 478 1.18e-167

GO (InterProScan)

3 results

GO Term Analysis Type e-value
alpha-L-fucosidase activity SMART molecular function 7.7E-198
carbohydrate metabolic process SMART biological process 7.7E-198
fucose metabolic process PIRSF biological process 2.4E-112

Back to Top