Gene Card
Best human hits
NXF1; NXF2; NXF2B
Unique Gene ID
Cirobu.g00013209
Gene Model ID
KH2012:KH.L87.47
Location
KhL87:126761..137029
Transcript Models and Sequences
External database links
1 result
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000014720 |
Gateway full ORF
2 results
cima891147
Plate: VES70_G20
cima8111274
Plate: VES73_I24
Gene collection 1 (N. Satoh)
2 results
cieg014l10
Plate: R1CiGC17l15
cicl046j10
Plate: R1CiGC13e20
n/a
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
14 results
| IPR Term | Analysis | Definition |
|---|---|---|
| TAP_C_dom | Pfam | TAP C-terminal (TAP-C) domain |
| Leu-rich_rpt | ProSiteProfiles | Leucine-rich repeat |
| TAP_C_dom | SMART | TAP C-terminal (TAP-C) domain |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| NXF_fam | PANTHER | Nuclear RNA export factor |
| TAP_C_dom | ProSiteProfiles | TAP C-terminal (TAP-C) domain |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| LRR_dom_sf | Gene3D | Leucine-rich repeat domain superfamily |
| NTF2-like_dom_sf | SUPERFAMILY | NTF2-like domain superfamily |
| Nuclear_transport_factor_2_euk | ProSiteProfiles | Nuclear transport factor 2, eukaryote |
| TAP_C_dom | CDD | TAP C-terminal (TAP-C) domain |
| Tap_RNA-bd | Pfam | Nuclear RNA export factor Tap, RNA-binding domain |
| Tap_RNA-bd | ProDom | Nuclear RNA export factor Tap, RNA-binding domain |
| UBA-like_sf | SUPERFAMILY | UBA-like superfamily |
GOSlim
17 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleic acid binding | Orthology | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| cytoplasm | Orthology | cellular component |
| cytosol | Orthology | cellular component |
| multicellular organism development | Orthology | biological process |
| nuclear speck | Orthology | cellular component |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| nuclear envelope | Orthology | cellular component |
| organic substance transport | Orthology | biological process |
| intracellular transport | Orthology | biological process |
| intracellular protein transport | Orthology | biological process |
| gene expression | Orthology | biological process |
| nucleoplasm part | Orthology | cellular component |
GO (Orthology)
20 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| transcription export complex | Hs | cellular component |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| mRNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nuclear pore | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| cytosol | Hs | cellular component |
| RNA export from nucleus | Hs | biological process |
| mRNA export from nucleus | Hs | biological process |
| multicellular organism development | Hs | biological process |
| viral process | Hs | biological process |
| nuclear speck | Hs | cellular component |
| poly(A)+ mRNA export from nucleus | Hs | biological process |
| nuclear RNA export factor complex | Hs | cellular component |
| nuclear inclusion body | Hs | cellular component |
| RNA transport | Hs | biological process |
| mRNA transport | Hs | biological process |
GO (Blast)
13 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| transcription export complex | Hs | cellular component | 342 | 2.92e-109 |
| nucleic acid binding | Hs | molecular function | 342 | 2.92e-109 |
| RNA binding | Hs | molecular function | 342 | 2.92e-109 |
| mRNA binding | Hs | molecular function | 342 | 2.92e-109 |
| protein binding | Hs | molecular function | 342 | 2.92e-109 |
| nucleus | Hs | cellular component | 342 | 2.92e-109 |
| nuclear pore | Hs | cellular component | 342 | 2.92e-109 |
| nucleoplasm | Hs | cellular component | 342 | 2.92e-109 |
| cytoplasm | Hs | cellular component | 342 | 2.92e-109 |
| cytosol | Hs | cellular component | 342 | 2.92e-109 |
| nuclear speck | Hs | cellular component | 342 | 2.92e-109 |
| nuclear RNA export factor complex | Hs | cellular component | 309 | 9.55e-97 |
| nuclear inclusion body | Hs | cellular component | 342 | 2.92e-109 |
GO (InterProScan)
7 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 3.97E-19 |
| RNA binding | Pfam | molecular function | 4.3E-28 |
| protein binding | SUPERFAMILY | molecular function | 2.04E-19 |
| nucleus | Pfam | cellular component | 4.3E-28 |
| cytoplasm | Pfam | cellular component | 4.3E-28 |
| mRNA export from nucleus | Pfam | biological process | 4.3E-28 |
| mRNA transport | SMART | biological process | 2.4E-25 |
