Aniseed - Gene card

Gene Card

Best human hits

AL121845.3; TFIP11; ZGPAT

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013370

Gene Model ID

KH2012:KH.L96.28

Location

KhL96:659223..667178

Transcript Models and Sequences

KH2012:KH.L96.28.v1.A.ND1-1
KH2012:KH.L96.28.v2.A.nonSL4-1
KH2012:KH.L96.28.v2.A.nonSL5-1
KH2012:KH.L96.28.v2.A.SL2-1
KH2012:KH.L96.28.v2.A.SL3-1
KH2012:KH.L96.28.v2.A.SL6-1
KH2012:KH.L96.28.v3.A.ND1-1
KH2012:KH.L96.28.v4.A.nonSL4-1
KH2012:KH.L96.28.v4.A.nonSL5-1
KH2012:KH.L96.28.v4.A.SL2-1
KH2012:KH.L96.28.v4.A.SL3-1
KH2012:KH.L96.28.v4.A.SL6-1

External Database Gene Card

External database links

7 results

Database	Gene ID
ENSEMBL	ENSCING00000008698
NCBI Reference Sequence	NM_001097619.1
NCBI Reference Sequence	XM_009863597.2
NCBI Reference Sequence	XM_009863598.2
NCBI Reference Sequence	XM_018816361.1
NCBI Reference Sequence	XM_018816362.1
NCBI Reference Sequence	XM_018816363.1

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

2 results

cicl099h01

Plate: R1CiGC39p15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
G_patch_dom	Pfam	G-patch domain
STIP	PIRSF	Septin and tuftelin interacting protein
G_patch_dom	ProSiteProfiles	G-patch domain
STIP/TFIP11_N	Pfam	Tuftelin interacting protein, N-terminal domain
G_patch_dom	SMART	G-patch domain
GCFC_dom	Pfam	GC-rich sequence DNA-binding factor-like domain

GOSlim

27 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
plasma membrane	Blast	cellular component
RNA processing	Orthology	biological process
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
nuclear speck	Orthology	cellular component
sequence-specific DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cellular response to DNA damage stimulus	Orthology	biological process
DNA metabolic process	Orthology	biological process
organelle organization	Orthology	biological process
regulation of molecular function	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
spliceosomal complex disassembly	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
nuclear chromosome, telomeric region	Hs	cellular component
nucleic acid binding	Hs	molecular function
protein binding	Hs	molecular function
proteinaceous extracellular matrix	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
RNA processing	Hs	biological process
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
nuclear speck	Hs	cellular component
negative regulation of protein complex assembly	Hs	biological process
protection from non-homologous end joining at telomere	Hs	biological process
negative regulation of protein binding	Hs	biological process
U2-type post-mRNA release spliceosomal complex	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component

GO (Blast)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromosome, telomeric region	Hs	cellular component	652	0.0
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	60.1	2.96e-09
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	60.1	2.96e-09
nucleic acid binding	Hs	molecular function	652	0.0
DNA binding	Hs	molecular function	60.1	2.96e-09
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	61.2	1.05e-09
protein binding	Hs	molecular function	652	0.0
proteinaceous extracellular matrix	Hs	cellular component	652	0.0
nucleus	Hs	cellular component	652	0.0
nucleoplasm	Hs	cellular component	652	0.0
spliceosomal complex	Hs	cellular component	652	0.0
nucleolus	Hs	cellular component	652	0.0
cytoplasm	Hs	cellular component	652	0.0
plasma membrane	Hs	cellular component	60.1	2.96e-09
membrane	Hs	cellular component	61.2	1.05e-09
integral component of membrane	Hs	cellular component	61.2	1.05e-09
nuclear speck	Hs	cellular component	652	0.0
sequence-specific DNA binding	Hs	molecular function	60.1	2.96e-09
metal ion binding	Hs	molecular function	61.2	1.05e-09
U2-type post-mRNA release spliceosomal complex	Hs	cellular component	652	0.0
catalytic step 2 spliceosome	Hs	cellular component	652	0.0

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	3.1E-15