Login
Help

GENE CARD

Submit your Data

  1. > 
  2. > 

Gene Card

Best human hits

EDEM1; EDEM2; EDEM3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00013992

Gene Model ID

KH2012:KH.S164.15

Location

KhS164:177654..184502

Transcript Models and Sequences

  KH2012:KH.S164.15.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000022697
NCBI Reference Sequence XM_018816694.1
Collections

Gateway full ORF

2 results

cien31684

Plate: VES75_E08

cien163949

Plate: VES95_C16

Gene collection 1 (N. Satoh)

2 results

cieg010g24

Plate: R1CiGC17o11

cieg096l07

Plate: R1CiGC40h10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree
 Click here to see the tree inference method

Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
6hp_glycosidase-like_sf Gene3D Six-hairpin glycosidase-like superfamily
Glyco_hydro_47 Pfam Glycoside hydrolase family 47
Glyco_hydro_47 PRINTS Glycoside hydrolase family 47
Seven-hairpin_glycosidases SUPERFAMILY Seven-hairpin glycosidases

GOSlim

20 results

GO Term Annotation Origin Type
Golgi membrane Orthology cellular component
catalytic activity Orthology molecular function
calcium ion binding Orthology molecular function
protein binding Orthology molecular function
endoplasmic reticulum Orthology cellular component
endoplasmic reticulum lumen Blast cellular component
endoplasmic reticulum membrane Orthology cellular component
metabolic process Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
hydrolase activity Orthology molecular function
metal ion binding Blast molecular function
protein metabolic process Orthology biological process
response to stress Orthology biological process
response to organic substance Orthology biological process
intracellular part Orthology cellular component
cellular response to stress Orthology biological process
proteolysis Orthology biological process
endoplasmic reticulum part Orthology cellular component
cellular protein modification process Orthology biological process

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
Golgi membrane Hs cellular component
catalytic activity Hs molecular function
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity Hs molecular function
calcium ion binding Hs molecular function
protein binding Hs molecular function
endoplasmic reticulum Hs cellular component
endoplasmic reticulum membrane Hs cellular component
N-glycan processing Hs biological process
response to unfolded protein Hs biological process
metabolic process Hs biological process
membrane Hs cellular component
integral component of membrane Hs cellular component
aggresome Hs cellular component
hydrolase activity Hs molecular function
hydrolase activity, acting on glycosyl bonds Hs molecular function
integral component of endoplasmic reticulum membrane Hs cellular component
ubiquitin-dependent ERAD pathway Hs biological process
endoplasmic reticulum quality control compartment Hs cellular component
misfolded protein binding Hs molecular function
ubiquitin-dependent glycoprotein ERAD pathway Hs biological process
mannose trimming involved in glycoprotein ERAD pathway Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 716 0.0
catalytic activity Hs molecular function 716 0.0
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity Hs molecular function 716 0.0
calcium ion binding Hs molecular function 716 0.0
protein binding Hs molecular function 716 0.0
endoplasmic reticulum Hs cellular component 716 0.0
endoplasmic reticulum lumen Hs cellular component 363 5.50e-115
endoplasmic reticulum membrane Hs cellular component 716 0.0
membrane Hs cellular component 716 0.0
integral component of membrane Hs cellular component 716 0.0
aggresome Hs cellular component 716 0.0
hydrolase activity Hs molecular function 716 0.0
hydrolase activity, acting on glycosyl bonds Hs molecular function 716 0.0
integral component of endoplasmic reticulum membrane Hs cellular component 716 0.0
endoplasmic reticulum quality control compartment Hs cellular component 716 0.0
metal ion binding Hs molecular function 363 5.50e-115
misfolded protein binding Hs molecular function 716 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
catalytic activity Gene3D molecular function 2.0E-154
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity SUPERFAMILY molecular function 1.14E-144
calcium ion binding SUPERFAMILY molecular function 1.14E-144
membrane SUPERFAMILY cellular component 1.14E-144

Back to Top