Aniseed - Gene card

Gene Card

Best human hits

ZBTB14; ZNF25; ZNF668

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014641

Gene Model ID

KH2012:KH.S534.1

Location

KhS534:32551..35455

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000002128
NCBI Reference Sequence	NM_001078406.1

Collections

Gene collection 1 (N. Satoh)

1 result

ciad046d07

Plate: R1CiGC04n20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
BTB/POZ_dom	Pfam	BTB/POZ domain
SKP1/BTB/POZ_sf	SUPERFAMILY	SKP1/BTB/POZ domain superfamily
BTB/POZ_dom	ProSiteProfiles	BTB/POZ domain
BTB/POZ_dom	SMART	BTB/POZ domain
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	SMART	Zinc finger C2H2-type

GOSlim

15 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
intracellular	Blast	cellular component
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
cytosol	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
intracellular part	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	155	9.62e-43
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	155	9.62e-43
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	155	9.62e-43
nucleic acid binding	Hs	molecular function	155	9.62e-43
DNA binding	Hs	molecular function	155	9.62e-43
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	155	9.62e-43
protein binding	Hs	molecular function	155	9.62e-43
intracellular	Hs	cellular component	138	2.77e-36
nucleus	Hs	cellular component	155	9.62e-43
nucleoplasm	Hs	cellular component	155	9.62e-43
nucleolus	Hs	cellular component	155	9.62e-43
cytosol	Hs	cellular component	155	9.62e-43
aggresome	Hs	cellular component	155	9.62e-43
sequence-specific DNA binding	Hs	molecular function	155	9.62e-43
transcription regulatory region DNA binding	Hs	molecular function	155	9.62e-43
metal ion binding	Hs	molecular function	155	9.62e-43

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	ProSiteProfiles	molecular function	10.263
protein binding	Pfam	molecular function	5.5E-25