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GENE CARD

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Gene Card

Best human hits

CYB5D2; NENF; PGRMC1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00014874

Gene Model ID

KH2012:KH.S654.4

Location

KhS654:21525..24366

Transcript Models and Sequences

  KH2012:KH.S654.4.v1.A.ND1-1
KH2012:KH.S654.4.v1.A.nonSL10-1
KH2012:KH.S654.4.v1.A.nonSL11-1
KH2012:KH.S654.4.v1.A.nonSL2-1
KH2012:KH.S654.4.v1.A.nonSL3-1
KH2012:KH.S654.4.v1.A.nonSL4-1
KH2012:KH.S654.4.v1.A.nonSL5-1
KH2012:KH.S654.4.v1.A.nonSL6-1
KH2012:KH.S654.4.v1.A.nonSL7-1
KH2012:KH.S654.4.v1.A.nonSL8-1
KH2012:KH.S654.4.v1.A.nonSL9-1

External Database Gene Card

External database links

No result

Collections

Gateway full ORF

2 results

cien77273

Plate: VES82_I10

cien95697

Plate: VES85_N08

Gene collection 1 (N. Satoh)

2 results

cicl051k09

Plate: R1CiGC14c11

cilv063p21

Plate: R1CiGC44o10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Cyt_B5-like_heme/steroid-bd Pfam Cytochrome b5-like heme/steroid binding domain
Cyt_B5-like_heme/steroid-bd SMART Cytochrome b5-like heme/steroid binding domain
Cyt_B5-like_heme/steroid_sf Gene3D Cytochrome b5-like heme/steroid binding domain superfamily
Cyt_B5-like_heme/steroid_sf SUPERFAMILY Cytochrome b5-like heme/steroid binding domain superfamily

GOSlim

35 results

GO Term Annotation Origin Type
protein binding Blast molecular function
extracellular region Orthology cellular component
extracellular space Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
endoplasmic reticulum Blast cellular component
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
nervous system development Orthology biological process
endomembrane system Orthology cellular component
membrane Orthology cellular component
integral component of membrane Blast cellular component
heme binding Orthology molecular function
organelle membrane Blast cellular component
neuron projection Blast cellular component
neuronal cell body Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
cell body Blast cellular component
synapse Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
cell development Orthology biological process
neuron differentiation Orthology biological process
organic cyclic compound binding Blast molecular function
receptor binding Blast molecular function
molecular function regulator Blast molecular function
regulation of signal transduction Blast biological process
signaling receptor activity Blast molecular function
binding Blast molecular function
endoplasmic reticulum membrane Blast cellular component
bounding membrane of organelle Blast cellular component
whole membrane Blast cellular component
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

6 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
extracellular region Hs cellular component
nervous system development Hs biological process
endomembrane system Hs cellular component
membrane Hs cellular component
heme binding Hs molecular function
positive regulation of neuron differentiation Hs biological process

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
steroid binding Hs molecular function 61.2 3.71e-11
protein binding Hs molecular function 61.2 3.71e-11
extracellular region Hs cellular component 229 9.68e-75
extracellular space Hs cellular component 68.9 4.84e-14
nucleus Hs cellular component 68.9 4.84e-14
nucleoplasm Hs cellular component 68.9 4.84e-14
endoplasmic reticulum Hs cellular component 61.2 3.71e-11
plasma membrane Hs cellular component 61.2 3.71e-11
integral component of plasma membrane Hs cellular component 61.2 3.71e-11
growth factor activity Hs molecular function 68.9 4.84e-14
lipid binding Hs molecular function 61.2 3.71e-11
endomembrane system Hs cellular component 229 9.68e-75
membrane Hs cellular component 229 9.68e-75
integral component of membrane Hs cellular component 61.2 3.71e-11
heme binding Hs molecular function 229 9.68e-75
smooth endoplasmic reticulum membrane Hs cellular component 61.2 3.71e-11
organelle membrane Hs cellular component 61.2 3.71e-11
specific granule membrane Hs cellular component 61.2 3.71e-11
neuron projection Hs cellular component 61.2 3.71e-11
neuronal cell body Hs cellular component 61.2 3.71e-11
intracellular membrane-bounded organelle Hs cellular component 61.2 3.71e-11
cell body Hs cellular component 61.2 3.71e-11
synapse Hs cellular component 61.2 3.71e-11
metal ion binding Hs molecular function 68.9 4.84e-14
extracellular exosome Hs cellular component 61.2 3.71e-11
amyloid-beta complex Hs cellular component 61.2 3.71e-11

GO (InterProScan)

No result

GO Term Analysis Type e-value

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