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GENE CARD

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Gene Card

Best human hits

RBMS1; RBMS2; RBMS3

Species

M.occidentalis

Unique Gene ID

Moocci.g00011387

Gene Model ID

Moocci.CG.ELv1_2.S391236.g11387

Location

S391236:5861..13564

Transcript Models and Sequences

  Moocci.CG.ELv1_2.S391236.g11387.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RRM_dom ProSiteProfiles RNA recognition motif domain
Hud_Sxl_RNA PRINTS Paraneoplastic encephalomyelitis antigen
RRM_dom Pfam RNA recognition motif domain
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom SMART RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
double-stranded DNA binding Hs molecular function
single-stranded DNA binding Hs molecular function
RNA binding Hs molecular function
mRNA 3'-UTR binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
DNA replication Hs biological process
RNA processing Hs biological process
poly(A) binding Hs molecular function
poly(U) RNA binding Hs molecular function
positive regulation of gene expression Hs biological process
negative regulation of gene expression Hs biological process
mRNA 3'-UTR AU-rich region binding Hs molecular function
positive regulation of translation Hs biological process
negative regulation of canonical Wnt signaling pathway Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 266 9.69e-84
DNA binding Hs molecular function 260 9.63e-82
double-stranded DNA binding Hs molecular function 260 9.63e-82
single-stranded DNA binding Hs molecular function 260 9.63e-82
RNA binding Hs molecular function 266 9.69e-84
mRNA 3'-UTR binding Hs molecular function 266 9.69e-84
protein binding Hs molecular function 260 9.63e-82
nucleus Hs cellular component 261 4.35e-82
cytoplasm Hs cellular component 266 9.69e-84
cytosol Hs cellular component 260 9.63e-82
poly(A) binding Hs molecular function 266 9.69e-84
poly(U) RNA binding Hs molecular function 266 9.69e-84
mRNA 3'-UTR AU-rich region binding Hs molecular function 266 9.69e-84

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 1.34E-20
RNA binding PRINTS molecular function 7.9E-8