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GENE CARD

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Gene Card

Best human hits

COL12A1; MATN2; SELP

Species

M.occidentalis

Unique Gene ID

Moocci.g00015193

Gene Model ID

Moocci.CG.ELv1_2.S460407.g15193

Location

S460407:26273..33567

Transcript Models and Sequences

  Moocci.CG.ELv1_2.S460407.g15193.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

21 results

IPR Term Analysis Definition
Sushi_SCR_CCP_dom Pfam Sushi/SCR/CCP domain
Sushi_SCR_CCP_dom CDD Sushi/SCR/CCP domain
EGF-like_dom Pfam EGF-like domain
vWFA_dom_sf SUPERFAMILY von Willebrand factor A-like domain superfamily
Sushi/SCR/CCP_sf SUPERFAMILY Sushi/SCR/CCP superfamily
VWF_A ProSiteProfiles von Willebrand factor, type A
Sushi_SCR_CCP_dom ProSiteProfiles Sushi/SCR/CCP domain
FN3_dom CDD Fibronectin type III
EGF-like_CS ProSitePatterns EGF-like, conserved site
EGF-like_dom SMART EGF-like domain
FN3_dom ProSiteProfiles Fibronectin type III
Ig-like_fold Gene3D Immunoglobulin-like fold
VWF_A Pfam von Willebrand factor, type A
EGF-like_dom ProSiteProfiles EGF-like domain
CD59_antigen_CS ProSitePatterns CD59 antigen, conserved site
Sushi_SCR_CCP_dom SMART Sushi/SCR/CCP domain
VWF_A SMART von Willebrand factor, type A
EGF-type_Asp/Asn_hydroxyl_site ProSitePatterns EGF-type aspartate/asparagine hydroxylation site
EGF-like_Ca-bd_dom SMART EGF-like calcium-binding domain
FN3_sf SUPERFAMILY Fibronectin type III superfamily
vWFA_dom_sf Gene3D von Willebrand factor A-like domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
lipopolysaccharide binding Hs molecular function 104 5.57e-23
calcium ion binding Hs molecular function 104 5.57e-23
protein binding Hs molecular function 104 5.57e-23
extracellular region Hs cellular component 100 2.41e-21
proteinaceous extracellular matrix Hs cellular component 100 2.41e-21
collagen trimer Hs cellular component 100 2.41e-21
collagen type XII trimer Hs cellular component 100 2.41e-21
basement membrane Hs cellular component 94.4 1.26e-19
extracellular space Hs cellular component 104 5.57e-23
endoplasmic reticulum lumen Hs cellular component 100 2.41e-21
plasma membrane Hs cellular component 104 5.57e-23
integral component of plasma membrane Hs cellular component 104 5.57e-23
heparin binding Hs molecular function 104 5.57e-23
external side of plasma membrane Hs cellular component 104 5.57e-23
membrane Hs cellular component 104 5.57e-23
integral component of membrane Hs cellular component 104 5.57e-23
extracellular matrix structural constituent conferring tensile strength Hs molecular function 100 2.41e-21
carbohydrate binding Hs molecular function 104 5.57e-23
extracellular matrix Hs cellular component 100 2.41e-21
platelet dense granule membrane Hs cellular component 104 5.57e-23
platelet alpha granule membrane Hs cellular component 104 5.57e-23
sialic acid binding Hs molecular function 104 5.57e-23
fucose binding Hs molecular function 104 5.57e-23
glycosphingolipid binding Hs molecular function 104 5.57e-23
metal ion binding Hs molecular function 104 5.57e-23
calcium-dependent protein binding Hs molecular function 104 5.57e-23
extracellular exosome Hs cellular component 100 2.41e-21
oligosaccharide binding Hs molecular function 104 5.57e-23
extracellular vesicle Hs cellular component 100 2.41e-21

GO (InterProScan)

2 results

GO Term Analysis Type e-value
calcium ion binding SMART molecular function 3.3E-4
protein binding CDD molecular function 3.6443E-9