Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

PUF60; U2AF2

Species

M.occidentalis

Unique Gene ID

Moocci.g00016805

Gene Model ID

Moocci.CG.ELv1_2.S478996.g16805

Location

S478996:23647..27788

Transcript Models and Sequences

  Moocci.CG.ELv1_2.S478996.g16805.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RRM_dom ProSiteProfiles RNA recognition motif domain
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
U2AF_lg TIGRFAM U2 snRNP auxilliary factor, large subunit, splicing factor
RRM_dom Pfam RNA recognition motif domain
RRM_dom SMART RNA recognition motif domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
commitment complex Hs cellular component
mRNA splicing, via spliceosome Hs biological process
Prp19 complex Hs cellular component
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
poly-pyrimidine tract binding Hs molecular function
RNA splicing Hs biological process
nuclear speck Hs cellular component
enzyme binding Hs molecular function
pre-mRNA 3'-splice site binding Hs molecular function
mRNA 3'-end processing Hs biological process
negative regulation of protein ubiquitination Hs biological process
positive regulation of RNA splicing Hs biological process
negative regulation of mRNA splicing, via spliceosome Hs biological process
C2H2 zinc finger domain binding Hs molecular function
U2-type prespliceosome Hs cellular component
U2AF Hs cellular component

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
commitment complex Hs cellular component 539 0.0
Prp19 complex Hs cellular component 539 0.0
nucleic acid binding Hs molecular function 539 0.0
DNA binding Hs molecular function 68.6 3.46e-12
RNA binding Hs molecular function 539 0.0
protein binding Hs molecular function 539 0.0
nucleus Hs cellular component 539 0.0
nucleoplasm Hs cellular component 539 0.0
spliceosomal complex Hs cellular component 539 0.0
poly-pyrimidine tract binding Hs molecular function 539 0.0
nuclear speck Hs cellular component 539 0.0
enzyme binding Hs molecular function 539 0.0
cyclin-dependent protein kinase activating kinase holoenzyme complex Hs cellular component 68.6 3.46e-12
cell junction Hs cellular component 68.6 3.46e-12
intracellular ribonucleoprotein complex Hs cellular component 68.6 3.46e-12
pre-mRNA 3'-splice site binding Hs molecular function 539 0.0
identical protein binding Hs molecular function 68.6 3.46e-12
cadherin binding Hs molecular function 68.6 3.46e-12
C2H2 zinc finger domain binding Hs molecular function 539 0.0
U2-type prespliceosome Hs cellular component 539 0.0
U2AF Hs cellular component 539 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 1.02E-25
RNA binding TIGRFAM molecular function 4.3E-152
nucleus TIGRFAM cellular component 4.3E-152
mRNA processing TIGRFAM biological process 4.3E-152