Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

SYNE1; SYNE2; SYNE3

Species

M.occidentalis

Unique Gene ID

Moocci.g00018817

Gene Model ID

Moocci.CG.ELv1_2.S497397.g18817

Location

S497397:17560..27781

Transcript Models and Sequences

  Moocci.CG.ELv1_2.S497397.g18817.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Spectrin/alpha-actinin SMART Spectrin/alpha-actinin
Spectrin_repeat Pfam Spectrin repeat
SYNE1 PANTHER Nesprin-1

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
P-body Hs cellular component 530 1.25e-155
RNA binding Hs molecular function 530 1.25e-155
actin binding Hs molecular function 530 1.25e-155
protein binding Hs molecular function 530 1.25e-155
lamin binding Hs molecular function 530 1.25e-155
nucleus Hs cellular component 530 1.25e-155
nuclear envelope Hs cellular component 530 1.25e-155
nuclear outer membrane Hs cellular component 530 1.25e-155
nucleoplasm Hs cellular component 530 1.25e-155
nucleolus Hs cellular component 530 1.25e-155
cytoplasm Hs cellular component 530 1.25e-155
mitochondrion Hs cellular component 82.8 1.76e-15
endoplasmic reticulum Hs cellular component 76.6 1.04e-13
rough endoplasmic reticulum Hs cellular component 76.6 1.04e-13
Golgi apparatus Hs cellular component 530 1.25e-155
cytoskeleton Hs cellular component 530 1.25e-155
plasma membrane Hs cellular component 82.8 1.76e-15
focal adhesion Hs cellular component 82.8 1.76e-15
cytoskeletal protein binding Hs molecular function 76.6 1.04e-13
membrane Hs cellular component 530 1.25e-155
integral component of membrane Hs cellular component 530 1.25e-155
aggresome Hs cellular component 82.8 1.76e-15
sarcoplasmic reticulum Hs cellular component 82.8 1.76e-15
enzyme binding Hs molecular function 530 1.25e-155
myofibril Hs cellular component 82.8 1.76e-15
sarcomere Hs cellular component 530 1.25e-155
Z disc Hs cellular component 82.8 1.76e-15
cell junction Hs cellular component 82.8 1.76e-15
lamellipodium membrane Hs cellular component 82.8 1.76e-15
filopodium membrane Hs cellular component 82.8 1.76e-15
nuclear membrane Hs cellular component 530 1.25e-155
nuclear lumen Hs cellular component 82.8 1.76e-15
sarcoplasmic reticulum membrane Hs cellular component 82.8 1.76e-15
LINC complex Hs cellular component 530 1.25e-155
protein homodimerization activity Hs molecular function 530 1.25e-155
intermediate filament cytoskeleton Hs cellular component 82.8 1.76e-15
postsynaptic membrane Hs cellular component 530 1.25e-155
actin filament binding Hs molecular function 530 1.25e-155
extracellular exosome Hs cellular component 82.8 1.76e-15

GO (InterProScan)

5 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 7.8E-7
nuclear envelope PANTHER cellular component 7.9E-245
LINC complex PANTHER cellular component 7.9E-245
actin filament binding PANTHER molecular function 7.9E-245
cytoskeletal anchoring at nuclear membrane PANTHER biological process 7.9E-245