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GENE CARD

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Gene Card

Best human hits

DDX6; EIF4A1; EIF4A3

Species

M.occidentalis

Unique Gene ID

Moocci.g00023927

Gene Model ID

Moocci.CG.ELv1_2.S591210.g23927

Location

S591210:6296..10703

Transcript Models and Sequences

  Moocci.CG.ELv1_2.S591210.g23927.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Helicase_C CDD Helicase, C-terminal
Helicase_C Pfam Helicase, C-terminal
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C SMART Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
heterochromatin Hs cellular component
P-body Hs cellular component
outer dense fiber Hs cellular component
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
cytosol Hs cellular component
regulation of translation Hs biological process
spermatogenesis Hs biological process
cytoplasmic stress granule Hs cellular component
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
RISC complex Hs cellular component
hydrolase activity Hs molecular function
stem cell population maintenance Hs biological process
protein domain specific binding Hs molecular function
cytoplasmic mRNA processing body assembly Hs biological process
cytoplasmic ribonucleoprotein granule Hs cellular component
P granule Hs cellular component
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay Hs biological process
cadherin binding Hs molecular function
negative regulation of neuron differentiation Hs biological process
sperm annulus Hs cellular component

GO (Blast)

44 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 509 0.0
RNA cap binding Hs molecular function 206 1.88e-63
heterochromatin Hs cellular component 509 0.0
P-body Hs cellular component 509 0.0
outer dense fiber Hs cellular component 509 0.0
nucleic acid binding Hs molecular function 509 0.0
RNA binding Hs molecular function 509 0.0
RNA helicase activity Hs molecular function 509 0.0
double-stranded RNA binding Hs molecular function 206 1.88e-63
mRNA binding Hs molecular function 223 5.75e-70
translation initiation factor activity Hs molecular function 206 1.88e-63
ATP-dependent RNA helicase activity Hs molecular function 509 0.0
helicase activity Hs molecular function 509 0.0
protein binding Hs molecular function 509 0.0
ATP binding Hs molecular function 509 0.0
nucleus Hs cellular component 509 0.0
nucleoplasm Hs cellular component 223 5.75e-70
spliceosomal complex Hs cellular component 223 5.75e-70
nucleolus Hs cellular component 509 0.0
cytoplasm Hs cellular component 509 0.0
mitochondrion Hs cellular component 509 0.0
cytosol Hs cellular component 509 0.0
translation factor activity, RNA binding Hs molecular function 206 1.88e-63
poly(A) binding Hs molecular function 223 5.75e-70
cytoplasmic stress granule Hs cellular component 509 0.0
membrane Hs cellular component 509 0.0
eukaryotic translation initiation factor 4F complex Hs cellular component 206 1.88e-63
RISC complex Hs cellular component 509 0.0
nuclear speck Hs cellular component 223 5.75e-70
hydrolase activity Hs molecular function 509 0.0
protein domain specific binding Hs molecular function 509 0.0
dendrite Hs cellular component 223 5.75e-70
intracellular ribonucleoprotein complex Hs cellular component 223 5.75e-70
exon-exon junction complex Hs cellular component 223 5.75e-70
selenocysteine insertion sequence binding Hs molecular function 223 5.75e-70
RNA stem-loop binding Hs molecular function 223 5.75e-70
cytoplasmic ribonucleoprotein granule Hs cellular component 509 0.0
ribonucleoprotein complex binding Hs molecular function 223 5.75e-70
neuronal cell body Hs cellular component 223 5.75e-70
P granule Hs cellular component 509 0.0
cadherin binding Hs molecular function 509 0.0
extracellular exosome Hs cellular component 206 1.88e-63
catalytic step 2 spliceosome Hs cellular component 223 5.75e-70
sperm annulus Hs cellular component 509 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 9.6E-23
ATP binding Pfam molecular function 9.6E-23

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