Aniseed - Gene card

Gene Card

Best human hits

NKX2-3; NKX2-5; NKX2-6

Species

M.occulta

Unique Gene ID

Mooccu.g00040314

Gene Model ID

Mooccu.CG.ELv1_2.S657543.g40314

Location

S657543:8462..14209

Transcript Models and Sequences

Mooccu.CG.ELv1_2.S657543.g40314.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Homeobox_metazoa	PRINTS	Homeobox domain, metazoa
Homeobox_dom	Pfam	Homeobox domain
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	CDD	Homeobox domain
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	SMART	Homeobox domain

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	164	7.20e-46
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	184	1.86e-53
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	164	7.20e-46
RNA polymerase II transcription cofactor activity	Hs	molecular function	164	7.20e-46
transcriptional activator activity, RNA polymerase II transcription factor binding	Hs	molecular function	164	7.20e-46
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	164	7.20e-46
DNA binding	Hs	molecular function	184	1.86e-53
chromatin binding	Hs	molecular function	164	7.20e-46
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	184	1.86e-53
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function	164	7.20e-46
protein binding	Hs	molecular function	164	7.20e-46
nucleus	Hs	cellular component	184	1.86e-53
transcription factor complex	Hs	cellular component	164	7.20e-46
cytoplasm	Hs	cellular component	164	7.20e-46
transcription factor binding	Hs	molecular function	164	7.20e-46
serum response element binding	Hs	molecular function	164	7.20e-46
macromolecular complex	Hs	cellular component	164	7.20e-46
protein-DNA complex	Hs	cellular component	164	7.20e-46
protein homodimerization activity	Hs	molecular function	164	7.20e-46
sequence-specific DNA binding	Hs	molecular function	184	1.86e-53
transcription regulatory region DNA binding	Hs	molecular function	164	7.20e-46
protein heterodimerization activity	Hs	molecular function	164	7.20e-46
RNA polymerase II transcription factor complex	Hs	cellular component	164	7.20e-46

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	4.0E-24
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function