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GENE CARD

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Gene Card

Best human hits

COL4A1; COL4A2; COL4A6

Species

M.oculata

Unique Gene ID

Moocul.g00009697

Gene Model ID

Moocul.CG.ELv1_2.S103735.g09697

Location

S103735:2954..25218

Transcript Models and Sequences

  Moocul.CG.ELv1_2.S103735.g09697.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Collagen_IV_NC ProSiteProfiles Collagen IV, non-collagenous
Collagen_IV_NC Pfam Collagen IV, non-collagenous
Collagen_IV_NC SMART Collagen IV, non-collagenous
CTDL_fold SUPERFAMILY C-type lectin fold
Collagen Pfam Collagen triple helix repeat
Collagen_IV_NC_sf Gene3D Collagen IV, non-collagenous domain superfamily

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
angiogenesis Hs biological process
structural molecule activity Hs molecular function
extracellular matrix structural constituent Hs molecular function
protein binding Hs molecular function
extracellular region Hs cellular component
proteinaceous extracellular matrix Hs cellular component
collagen trimer Hs cellular component
collagen type IV trimer Hs cellular component
basement membrane Hs cellular component
extracellular space Hs cellular component
endoplasmic reticulum lumen Hs cellular component
transcription, DNA-templated Hs biological process
cell adhesion Hs biological process
aging Hs biological process
response to activity Hs biological process
negative regulation of angiogenesis Hs biological process
extracellular matrix organization Hs biological process
collagen catabolic process Hs biological process
extracellular matrix Hs cellular component
endodermal cell differentiation Hs biological process
collagen-activated tyrosine kinase receptor signaling pathway Hs biological process
extracellular exosome Hs cellular component
cellular response to amino acid stimulus Hs biological process
cellular response to transforming growth factor beta stimulus Hs biological process
basal lamina Hs cellular component
glomerular basement membrane development Hs biological process

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
structural molecule activity Hs molecular function 711 0.0
extracellular matrix structural constituent Hs molecular function 711 0.0
protein binding Hs molecular function 591 0.0
extracellular region Hs cellular component 711 0.0
proteinaceous extracellular matrix Hs cellular component 711 0.0
collagen trimer Hs cellular component 711 0.0
collagen type IV trimer Hs cellular component 711 0.0
basement membrane Hs cellular component 711 0.0
extracellular space Hs cellular component 591 0.0
endoplasmic reticulum lumen Hs cellular component 711 0.0
extracellular matrix constituent conferring elasticity Hs molecular function 550 2.34e-166
extracellular matrix Hs cellular component 591 0.0
platelet-derived growth factor binding Hs molecular function 550 2.34e-166
extracellular exosome Hs cellular component 591 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
extracellular matrix structural constituent Gene3D molecular function 2.9E-110
collagen trimer Gene3D cellular component 2.9E-110