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GENE CARD

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Gene Card

Best human hits

DKC1; TRUB1

Species

M.oculata

Unique Gene ID

Moocul.g00014657

Gene Model ID

Moocul.CG.ELv1_2.S125443.g14657

Location

S125443:37889..44187

Transcript Models and Sequences

  Moocul.CG.ELv1_2.S125443.g14657.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term Analysis Definition
tRNA_PsdUridine_synth_B_fam TIGRFAM tRNA pseudouridine synthase B family
PUA Pfam PUA domain
Uncharacterised_CHP00451 TIGRFAM Uncharacterised domain CHP00451
TruB_C Pfam tRNA pseudouridylate synthase B, C-terminal
tRNA_PsdUridine_synth_B_fam PANTHER tRNA pseudouridine synthase B family
PsdUridine_synth_cat_dom_sf SUPERFAMILY Pseudouridine synthase, catalytic domain superfamily
Dyskerin-like Pfam Dyskerin-like
Dyskerin-like SMART Dyskerin-like
PUA SMART PUA domain
PsdUridine_synth_N Pfam Pseudouridine synthase II, N-terminal
PUA-like_sf SUPERFAMILY PUA-like superfamily
PUA ProSiteProfiles PUA domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
box H/ACA snoRNA 3'-end processing Hs biological process
pseudouridine synthesis Hs biological process
fibrillar center Hs cellular component
telomerase activity Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
telomerase holoenzyme complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
rRNA processing Hs biological process
RNA processing Hs biological process
telomere maintenance via telomerase Hs biological process
cell proliferation Hs biological process
RNA modification Hs biological process
pseudouridine synthase activity Hs molecular function
Cajal body Hs cellular component
membrane Hs cellular component
integral component of membrane Hs cellular component
isomerase activity Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
rRNA pseudouridine synthesis Hs biological process
snRNA pseudouridine synthesis Hs biological process
box H/ACA snoRNP complex Hs cellular component
positive regulation of telomere maintenance via telomerase Hs biological process
box H/ACA snoRNA binding Hs molecular function
ribosome biogenesis Hs biological process
telomerase RNA binding Hs molecular function
box H/ACA scaRNP complex Hs cellular component
box H/ACA telomerase RNP complex Hs cellular component
positive regulation of telomerase RNA localization to Cajal body Hs biological process
mRNA pseudouridine synthesis Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
fibrillar center Hs cellular component 644 0.0
telomerase activity Hs molecular function 644 0.0
RNA binding Hs molecular function 644 0.0
protein binding Hs molecular function 644 0.0
nucleus Hs cellular component 644 0.0
nucleoplasm Hs cellular component 644 0.0
telomerase holoenzyme complex Hs cellular component 644 0.0
nucleolus Hs cellular component 644 0.0
cytoplasm Hs cellular component 644 0.0
mitochondrion Hs cellular component 68.6 1.58e-12
pseudouridine synthase activity Hs molecular function 644 0.0
Cajal body Hs cellular component 644 0.0
membrane Hs cellular component 644 0.0
integral component of membrane Hs cellular component 644 0.0
isomerase activity Hs molecular function 644 0.0
intracellular ribonucleoprotein complex Hs cellular component 644 0.0
box H/ACA snoRNP complex Hs cellular component 644 0.0
box H/ACA snoRNA binding Hs molecular function 644 0.0
telomerase RNA binding Hs molecular function 644 0.0
box H/ACA scaRNP complex Hs cellular component 644 0.0
box H/ACA telomerase RNP complex Hs cellular component 644 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
pseudouridine synthesis SUPERFAMILY biological process 3.6E-77
RNA binding SUPERFAMILY molecular function 3.6E-77
RNA processing PANTHER biological process 1.9E-238
RNA modification SUPERFAMILY biological process 3.6E-77
pseudouridine synthase activity SUPERFAMILY molecular function 3.6E-77