Gene Card
Best human hits
PABPC1; PABPC4; SF3B4
Species
Unique Gene ID
Moocul.g00001051
Gene Model ID
Moocul.CG.ELv1_2.S24758.g01051
Location
S24758:99342..105627
Transcript Models and Sequences
Moocul.CG.ELv1_2.S24758.g01051.01.t
Moocul.CG.ELv1_2.S24758.g01051.02.t
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| SF3B4_RRM1 | CDD | SF3B4, RNA recognition motif 1 |
| SF3B4_RRM2 | CDD | SF3B4, RNA recognition motif 2 |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| RRM_dom | SMART | RNA recognition motif domain |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| RRM_dom | Pfam | RNA recognition motif domain |
| GO Term | Annotation Origin | Type |
|---|
GO (Orthology)
12 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| RNA splicing, via transesterification reactions | Hs | biological process |
| mRNA splicing, via spliceosome | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| U12-type spliceosomal complex | Hs | cellular component |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| positive regulation of mRNA splicing, via spliceosome | Hs | biological process |
GO (Blast)
22 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 413 | 3.03e-144 |
| RNA binding | Hs | molecular function | 413 | 3.03e-144 |
| mRNA binding | Hs | molecular function | 129 | 2.77e-33 |
| mRNA 3'-UTR binding | Hs | molecular function | 124 | 1.29e-31 |
| protein binding | Hs | molecular function | 413 | 3.03e-144 |
| nucleus | Hs | cellular component | 413 | 3.03e-144 |
| nucleoplasm | Hs | cellular component | 413 | 3.03e-144 |
| spliceosomal complex | Hs | cellular component | 413 | 3.03e-144 |
| U12-type spliceosomal complex | Hs | cellular component | 413 | 3.03e-144 |
| cytoplasm | Hs | cellular component | 129 | 2.77e-33 |
| cytosol | Hs | cellular component | 129 | 2.77e-33 |
| focal adhesion | Hs | cellular component | 124 | 1.29e-31 |
| protein C-terminus binding | Hs | molecular function | 124 | 1.29e-31 |
| poly(A) binding | Hs | molecular function | 129 | 2.77e-33 |
| poly(U) RNA binding | Hs | molecular function | 129 | 2.77e-33 |
| translation activator activity | Hs | molecular function | 124 | 1.29e-31 |
| cytoplasmic stress granule | Hs | cellular component | 129 | 2.77e-33 |
| membrane | Hs | cellular component | 124 | 1.29e-31 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 129 | 2.77e-33 |
| cytoplasmic ribonucleoprotein granule | Hs | cellular component | 124 | 1.29e-31 |
| extracellular exosome | Hs | cellular component | 124 | 1.29e-31 |
| catalytic step 2 spliceosome | Hs | cellular component | 124 | 1.29e-31 |
GO (InterProScan)
1 result
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 7.43E-48 |
