Aniseed - Gene card

Gene Card

Best human hits

CDK12; CDK13; CDK9

Species

M.oculata

Unique Gene ID

Moocul.g00001197

Gene Model ID

Moocul.CG.ELv1_2.S26494.g01197

Location

S26494:34727..40258

Transcript Models and Sequences

Moocul.CG.ELv1_2.S26494.g01197.01.t
Moocul.CG.ELv1_2.S26494.g01197.02.t
Moocul.CG.ELv1_2.S26494.g01197.03.t
Moocul.CG.ELv1_2.S26494.g01197.04.t
Moocul.CG.ELv1_2.S26494.g01197.05.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
MRP-S31	Pfam	Mitochondrial 28S ribosomal protein S31
MRP-S31	PANTHER	Mitochondrial 28S ribosomal protein S31
Kinase-like_dom_sf	SUPERFAMILY	Protein kinase-like domain superfamily
Prot_kinase_dom	SMART	Protein kinase domain
Protein_kinase_ATP_BS	ProSitePatterns	Protein kinase, ATP binding site
Prot_kinase_dom	ProSiteProfiles	Protein kinase domain
Prot_kinase_dom	Pfam	Protein kinase domain
Ser/Thr_kinase_AS	ProSitePatterns	Serine/threonine-protein kinase, active site

GOSlim

No result

GO Term	Annotation Origin	Type

GO (Orthology)

48 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
transcription coactivator binding	Hs	molecular function
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
protein kinase activity	Hs	molecular function
protein serine/threonine kinase activity	Hs	molecular function
cyclin-dependent protein serine/threonine kinase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
chromosome	Hs	cellular component
cytoplasm	Hs	cellular component
DNA repair	Hs	biological process
regulation of DNA repair	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
protein phosphorylation	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
transcription elongation factor complex	Hs	cellular component
cyclin/CDK positive transcription elongation factor complex	Hs	cellular component
transcription factor binding	Hs	molecular function
cell proliferation	Hs	biological process
RNA polymerase II carboxy-terminal domain kinase activity	Hs	molecular function
membrane	Hs	cellular component
kinase activity	Hs	molecular function
phosphorylation	Hs	biological process
PML body	Hs	cellular component
transferase activity	Hs	molecular function
snRNA binding	Hs	molecular function
protein kinase binding	Hs	molecular function
cyclin binding	Hs	molecular function
replication fork processing	Hs	biological process
positive regulation of histone phosphorylation	Hs	biological process
cytoplasmic ribonucleoprotein granule	Hs	cellular component
response to drug	Hs	biological process
snRNA transcription from RNA polymerase II promoter	Hs	biological process
transcription regulatory region DNA binding	Hs	molecular function
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
phosphorylation of RNA polymerase II C-terminal domain	Hs	biological process
negative regulation of cell cycle arrest	Hs	biological process
7SK snRNA binding	Hs	molecular function
negative regulation of mRNA polyadenylation	Hs	biological process
positive regulation of histone H2B ubiquitination	Hs	biological process

GO (Blast)

39 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	566	0.0
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	566	0.0
transcription coactivator binding	Hs	molecular function	566	0.0
fibrillar center	Hs	cellular component	289	6.47e-88
cyclin K-CDK12 complex	Hs	cellular component	289	6.47e-88
cyclin K-CDK13 complex	Hs	cellular component	294	1.27e-89
DNA binding	Hs	molecular function	566	0.0
chromatin binding	Hs	molecular function	566	0.0
RNA binding	Hs	molecular function	294	1.27e-89
protein kinase activity	Hs	molecular function	566	0.0
protein serine/threonine kinase activity	Hs	molecular function	566	0.0
cyclin-dependent protein serine/threonine kinase activity	Hs	molecular function	566	0.0
protein binding	Hs	molecular function	566	0.0
ATP binding	Hs	molecular function	566	0.0
extracellular region	Hs	cellular component	294	1.27e-89
extracellular space	Hs	cellular component	294	1.27e-89
nucleus	Hs	cellular component	566	0.0
nucleoplasm	Hs	cellular component	566	0.0
chromosome	Hs	cellular component	566	0.0
cytoplasm	Hs	cellular component	566	0.0
Golgi apparatus	Hs	cellular component	294	1.27e-89
cytosol	Hs	cellular component	294	1.27e-89
transcription elongation factor complex	Hs	cellular component	566	0.0
cyclin/CDK positive transcription elongation factor complex	Hs	cellular component	566	0.0
transcription factor binding	Hs	molecular function	566	0.0
RNA polymerase II carboxy-terminal domain kinase activity	Hs	molecular function	566	0.0
membrane	Hs	cellular component	566	0.0
kinase activity	Hs	molecular function	566	0.0
PML body	Hs	cellular component	566	0.0
nuclear speck	Hs	cellular component	294	1.27e-89
transferase activity	Hs	molecular function	566	0.0
snRNA binding	Hs	molecular function	566	0.0
protein kinase binding	Hs	molecular function	566	0.0
nuclear cyclin-dependent protein kinase holoenzyme complex	Hs	cellular component	294	1.27e-89
cyclin binding	Hs	molecular function	566	0.0
cytoplasmic ribonucleoprotein granule	Hs	cellular component	566	0.0
transcription regulatory region DNA binding	Hs	molecular function	566	0.0
7SK snRNA binding	Hs	molecular function	566	0.0
ficolin-1-rich granule lumen	Hs	cellular component	294	1.27e-89

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
protein kinase activity	SMART	molecular function	2.0E-89
ATP binding	SMART	molecular function	2.0E-89
protein phosphorylation	SMART	biological process	2.0E-89
structural constituent of ribosome	Pfam	molecular function	1.0E-44
mitochondrial small ribosomal subunit	Pfam	cellular component	1.0E-44