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GENE CARD

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Gene Card

Best human hits

HMGB1; HMGB2; HMGB3

Species

M.oculata

Unique Gene ID

Moocul.g00006269

Gene Model ID

Moocul.CG.ELv1_2.S83332.g06269

Location

S83332:23491..24265

Transcript Models and Sequences

  Moocul.CG.ELv1_2.S83332.g06269.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
HMG_box_dom ProSiteProfiles High mobility group box domain
HMG_box_dom_sf Gene3D High mobility group box domain superfamily
HMG_box_dom_sf SUPERFAMILY High mobility group box domain superfamily
HMG_box_dom Pfam High mobility group box domain
HMG_box_dom SMART High mobility group box domain

GOSlim

No result

GO Term Annotation Origin Type

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

54 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
four-way junction DNA binding Hs molecular function 188 1.13e-60
bubble DNA binding Hs molecular function 188 1.13e-60
nuclear chromatin Hs cellular component 184 2.14e-59
condensed chromosome Hs cellular component 188 1.13e-60
enhancer sequence-specific DNA binding Hs molecular function 184 2.14e-59
lipopolysaccharide binding Hs molecular function 188 1.13e-60
phosphatidylserine binding Hs molecular function 188 1.13e-60
DNA binding Hs molecular function 188 1.13e-60
damaged DNA binding Hs molecular function 188 1.13e-60
double-stranded DNA binding Hs molecular function 188 1.13e-60
single-stranded DNA binding Hs molecular function 188 1.13e-60
transcription factor activity, sequence-specific DNA binding Hs molecular function 188 1.13e-60
RNA binding Hs molecular function 188 1.13e-60
double-stranded RNA binding Hs molecular function 188 1.13e-60
single-stranded RNA binding Hs molecular function 188 1.13e-60
cytokine activity Hs molecular function 188 1.13e-60
integrin binding Hs molecular function 188 1.13e-60
protein binding Hs molecular function 188 1.13e-60
extracellular region Hs cellular component 188 1.13e-60
extracellular space Hs cellular component 188 1.13e-60
cell Hs cellular component 184 2.14e-59
nucleus Hs cellular component 188 1.13e-60
nucleoplasm Hs cellular component 188 1.13e-60
chromosome Hs cellular component 188 1.13e-60
nucleolus Hs cellular component 184 2.14e-59
cytoplasm Hs cellular component 188 1.13e-60
endosome Hs cellular component 188 1.13e-60
early endosome Hs cellular component 188 1.13e-60
endoplasmic reticulum-Golgi intermediate compartment Hs cellular component 188 1.13e-60
plasma membrane Hs cellular component 188 1.13e-60
transcription factor binding Hs molecular function 188 1.13e-60
drug binding Hs molecular function 184 2.14e-59
DNA binding, bending Hs molecular function 188 1.13e-60
cell surface Hs cellular component 188 1.13e-60
calcium-dependent protein kinase regulator activity Hs molecular function 188 1.13e-60
membrane Hs cellular component 188 1.13e-60
lyase activity Hs molecular function 188 1.13e-60
transcriptional repressor complex Hs cellular component 188 1.13e-60
protein domain specific binding Hs molecular function 184 2.14e-59
C-X-C chemokine binding Hs molecular function 188 1.13e-60
protein kinase activator activity Hs molecular function 188 1.13e-60
macromolecular complex Hs cellular component 184 2.14e-59
secretory granule lumen Hs cellular component 188 1.13e-60
alphav-beta3 integrin-HMGB1 complex Hs cellular component 188 1.13e-60
chemoattractant activity Hs molecular function 188 1.13e-60
neuron projection Hs cellular component 188 1.13e-60
transcription regulatory region DNA binding Hs molecular function 184 2.14e-59
non-sequence-specific DNA binding, bending Hs molecular function 184 2.14e-59
perinuclear region of cytoplasm Hs cellular component 184 2.14e-59
RAGE receptor binding Hs molecular function 188 1.13e-60
DNA polymerase binding Hs molecular function 188 1.13e-60
repressing transcription factor binding Hs molecular function 188 1.13e-60
supercoiled DNA binding Hs molecular function 188 1.13e-60
ficolin-1-rich granule lumen Hs cellular component 188 1.13e-60

GO (InterProScan)

No result

GO Term Analysis Type e-value