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Gene Card

Best human hits

CELSR3; NOTCH1; SNED1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00015711

Gene Model ID

NCBI:KH.100178545

Location

KhL35:62112..67763

Transcript Models and Sequences

  NCBI:KH.XM_018815899.1

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
C-type_lectin-like ProSiteProfiles C-type lectin-like
EGF-like_dom ProSiteProfiles EGF-like domain
EGF-like_Ca-bd_dom SMART EGF-like calcium-binding domain
C-type_lectin-like SMART C-type lectin-like
C-type_lectin-like/link_sf Gene3D C-type lectin-like/link domain superfamily
EGF-like_dom Pfam EGF-like domain
EGF-like_CS ProSitePatterns EGF-like, conserved site
CTDL_fold SUPERFAMILY C-type lectin fold
C-type_lectin-like Pfam C-type lectin-like
EGF-like_dom SMART EGF-like domain
Sushi_SCR_CCP_dom ProSiteProfiles Sushi/SCR/CCP domain

GOSlim

35 results

GO Term Annotation Origin Type
Golgi membrane Blast cellular component
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
signal transducer activity Blast molecular function
transmembrane signaling receptor activity Blast molecular function
G-protein coupled receptor activity Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
endoplasmic reticulum Blast cellular component
endoplasmic reticulum membrane Blast cellular component
Golgi apparatus Blast cellular component
cytosol Blast cellular component
plasma membrane Blast cellular component
adherens junction Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
apical plasma membrane Blast cellular component
enzyme binding Blast molecular function
cytoplasmic vesicle Blast cellular component
sequence-specific DNA binding Blast molecular function
metal ion binding Blast molecular function
protein heterodimerization activity Blast molecular function
extracellular exosome Blast cellular component
cell periphery Blast cellular component
transcription regulatory region DNA binding Blast molecular function
endomembrane system Blast cellular component
macromolecular complex Blast cellular component
enzyme regulator activity Blast molecular function
receptor binding Blast molecular function
DNA binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

38 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 73.2 2.69e-13
core promoter binding Hs molecular function 73.2 2.69e-13
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function 73.2 2.69e-13
acrosomal vesicle Hs cellular component 73.2 2.69e-13
MAML1-RBP-Jkappa- ICN1 complex Hs cellular component 73.2 2.69e-13
chromatin binding Hs molecular function 73.2 2.69e-13
transcription factor activity, sequence-specific DNA binding Hs molecular function 73.2 2.69e-13
enzyme inhibitor activity Hs molecular function 73.2 2.69e-13
signal transducer activity Hs molecular function 74.3 1.31e-13
receptor activity Hs molecular function 73.2 2.69e-13
transmembrane signaling receptor activity Hs molecular function 74.3 1.31e-13
G-protein coupled receptor activity Hs molecular function 74.3 1.31e-13
Notch binding Hs molecular function 73.2 2.69e-13
calcium ion binding Hs molecular function 74.3 1.31e-13
protein binding Hs molecular function 74.3 1.31e-13
extracellular region Hs cellular component 73.2 2.69e-13
nucleus Hs cellular component 73.2 2.69e-13
nucleoplasm Hs cellular component 73.2 2.69e-13
cytoplasm Hs cellular component 73.2 2.69e-13
endoplasmic reticulum Hs cellular component 73.2 2.69e-13
endoplasmic reticulum membrane Hs cellular component 73.2 2.69e-13
Golgi apparatus Hs cellular component 73.2 2.69e-13
cytosol Hs cellular component 73.2 2.69e-13
plasma membrane Hs cellular component 74.3 1.31e-13
adherens junction Hs cellular component 73.2 2.69e-13
cell surface Hs cellular component 73.2 2.69e-13
membrane Hs cellular component 74.3 1.31e-13
integral component of membrane Hs cellular component 74.3 1.31e-13
apical plasma membrane Hs cellular component 73.2 2.69e-13
enzyme binding Hs molecular function 73.2 2.69e-13
cytoplasmic vesicle Hs cellular component 73.2 2.69e-13
chromatin DNA binding Hs molecular function 73.2 2.69e-13
receptor complex Hs cellular component 73.2 2.69e-13
sequence-specific DNA binding Hs molecular function 73.2 2.69e-13
metal ion binding Hs molecular function 73.2 2.69e-13
protein heterodimerization activity Hs molecular function 73.2 2.69e-13
extracellular exosome Hs cellular component 70.5 1.81e-12
cell periphery Hs cellular component 73.2 2.69e-13

GO (InterProScan)

1 result

GO Term Analysis Type e-value
calcium ion binding SMART molecular function 0.0013

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