Gene Card
Best human hits
SF3B1; SUPT5H
Species
Unique Gene ID
Phfumi.g00003562
Gene Model ID
Phfumi.CG.MTP2014.S1316.g03562
Location
S1316:0..10582
Transcript Models and Sequences
Phfumi.CG.MTP2014.S1316.g03562.01.t
Phfumi.CG.MTP2014.S1316.g03562.02.t
Phfumi.CG.MTP2014.S1316.g03562.03.t
Phfumi.CG.MTP2014.S1316.g03562.04.t
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
3 results
| IPR Term | Analysis | Definition |
|---|---|---|
| ARM-like | Gene3D | Armadillo-like helical |
| ARM-type_fold | SUPERFAMILY | Armadillo-type fold |
| SF3b_su1 | Pfam | Splicing factor 3B subunit 1 |
GOSlim
18 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| RNA splicing, via transesterification reactions | Orthology | biological process |
| mRNA splicing, via spliceosome | Orthology | biological process |
| DNA binding | Blast | molecular function |
| chromatin binding | Blast | molecular function |
| RNA binding | Orthology | molecular function |
| binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| nuclear speck | Orthology | cellular component |
| enzyme binding | Blast | molecular function |
| protein heterodimerization activity | Blast | molecular function |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| positive regulation of gene expression | Orthology | biological process |
| nucleoplasm part | Blast | cellular component |
GO (Orthology)
19 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| spliceosomal complex assembly | Hs | biological process |
| RNA splicing, via transesterification reactions | Hs | biological process |
| mRNA splicing, via spliceosome | Hs | biological process |
| RNA binding | Hs | molecular function |
| mRNA binding | Hs | molecular function |
| binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| U2 snRNP | Hs | cellular component |
| U12-type spliceosomal complex | Hs | cellular component |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| nuclear speck | Hs | cellular component |
| U11/U12 snRNP | Hs | cellular component |
| positive regulation of gene expression, epigenetic | Hs | biological process |
| U2-type prespliceosome | Hs | cellular component |
| catalytic step 2 spliceosome | Hs | cellular component |
GO (Blast)
18 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| DNA binding | Hs | molecular function | 43.1 | 0.001 |
| chromatin binding | Hs | molecular function | 43.1 | 0.001 |
| RNA binding | Hs | molecular function | 1590 | 0.0 |
| mRNA binding | Hs | molecular function | 1590 | 0.0 |
| binding | Hs | molecular function | 1590 | 0.0 |
| protein binding | Hs | molecular function | 1590 | 0.0 |
| nucleus | Hs | cellular component | 1590 | 0.0 |
| nucleoplasm | Hs | cellular component | 1590 | 0.0 |
| spliceosomal complex | Hs | cellular component | 1590 | 0.0 |
| U2 snRNP | Hs | cellular component | 1590 | 0.0 |
| U12-type spliceosomal complex | Hs | cellular component | 1590 | 0.0 |
| nuclear speck | Hs | cellular component | 1590 | 0.0 |
| enzyme binding | Hs | molecular function | 43.1 | 0.001 |
| DSIF complex | Hs | cellular component | 43.1 | 0.001 |
| U11/U12 snRNP | Hs | cellular component | 1590 | 0.0 |
| protein heterodimerization activity | Hs | molecular function | 43.1 | 0.001 |
| U2-type prespliceosome | Hs | cellular component | 1590 | 0.0 |
| catalytic step 2 spliceosome | Hs | cellular component | 1590 | 0.0 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| spliceosomal complex assembly | PANTHER | biological process | 0.0 |
| mRNA binding | PANTHER | molecular function | 0.0 |
| binding | SUPERFAMILY | molecular function | 2.48E-92 |
