Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	SMART	RNA recognition motif domain
RRM_dom	Pfam	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	ProSiteProfiles	RNA recognition motif domain

GOSlim

42 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
RNA processing	Orthology	biological process
cell projection	Orthology	cellular component
mRNA splicing, via spliceosome	Orthology	biological process
chromatin binding	Orthology	molecular function
extracellular space	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
mRNA processing	Orthology	biological process
spermatogenesis	Orthology	biological process
RNA splicing	Orthology	biological process
membrane	Orthology	cellular component
RNA metabolic process	Orthology	biological process
identical protein binding	Orthology	molecular function
positive regulation of transcription, DNA-templated	Orthology	biological process
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
protein oligomerization	Orthology	biological process
protein homooligomerization	Orthology	biological process
extracellular exosome	Orthology	cellular component
regulation of gene expression	Orthology	biological process
response to stress	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular organelle part	Orthology	cellular component
ribosome	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
mRNA catabolic process	Orthology	biological process
transcription regulatory region DNA binding	Orthology	molecular function
cell differentiation	Orthology	biological process
nuclear part	Orthology	cellular component
nuclear lumen	Orthology	cellular component
proteolysis	Orthology	biological process
reproductive process	Orthology	biological process
animal organ development	Orthology	biological process

GO (Orthology)

55 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
RNA processing	Hs	biological process
regulation of translation	Hs	biological process
response to cold	Hs	biological process
response to UV	Hs	biological process
cytoplasmic stress granule	Hs	cellular component
large ribosomal subunit	Hs	cellular component
negative regulation of translation	Hs	biological process
translation repressor activity	Hs	molecular function
dendrite	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
stress granule assembly	Hs	biological process
cell projection	Hs	cellular component
positive regulation of translation	Hs	biological process
mRNA stabilization	Hs	biological process
small ribosomal subunit rRNA binding	Hs	molecular function
regulation of alternative mRNA splicing, via spliceosome	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
core promoter binding	Hs	molecular function
osteoblast differentiation	Hs	biological process
chromatin binding	Hs	molecular function
single-stranded RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
extracellular space	Hs	cellular component
spliceosomal complex	Hs	cellular component
nuclear euchromatin	Hs	cellular component
transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
mRNA splice site selection	Hs	biological process
mRNA processing	Hs	biological process
membrane protein ectodomain proteolysis	Hs	biological process
spermatogenesis	Hs	biological process
RNA splicing	Hs	biological process
male gonad development	Hs	biological process
membrane	Hs	cellular component
RNA metabolic process	Hs	biological process
protein domain specific binding	Hs	molecular function
identical protein binding	Hs	molecular function
supraspliceosomal complex	Hs	cellular component
positive regulation of transcription, DNA-templated	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of mRNA splicing, via spliceosome	Hs	biological process
positive regulation of mRNA splicing, via spliceosome	Hs	biological process
protein oligomerization	Hs	biological process
protein homooligomerization	Hs	biological process
extracellular exosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component
cellular response to interleukin-1	Hs	biological process

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	75.1	7.25e-18
RNA binding	Hs	molecular function	75.1	7.25e-18
mRNA 3'-UTR binding	Hs	molecular function	68.2	2.75e-14
protein binding	Hs	molecular function	75.1	7.25e-18
nucleus	Hs	cellular component	75.1	7.25e-18
nucleoplasm	Hs	cellular component	75.1	7.25e-18
nucleolus	Hs	cellular component	75.1	7.25e-18
cytoplasm	Hs	cellular component	75.1	7.25e-18
cytoplasmic stress granule	Hs	cellular component	68.2	2.75e-14
large ribosomal subunit	Hs	cellular component	75.1	7.25e-18
translation repressor activity	Hs	molecular function	68.2	2.75e-14
dendrite	Hs	cellular component	75.1	7.25e-18
intracellular ribonucleoprotein complex	Hs	cellular component	70.1	8.55e-15
cell projection	Hs	cellular component	75.1	7.25e-18
small ribosomal subunit rRNA binding	Hs	molecular function	68.2	2.75e-14

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	2.15E-29

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location