Aniseed - Gene card

Gene Card

Best human hits

AP002373.1; RBM11; RBM7

Species

P.fumigata

Unique Gene ID

Phfumi.g00006328

Gene Model ID

Phfumi.CG.MTP2014.S4387.g06328

Location

S4387:11088..11748

Transcript Models and Sequences

Phfumi.CG.MTP2014.S4387.g06328.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
RRM_dom	SMART	RNA recognition motif domain
RRM_dom	Pfam	RNA recognition motif domain

GOSlim

16 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
mRNA processing	Orthology	biological process
multicellular organism development	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear speck	Orthology	cellular component
cell differentiation	Orthology	biological process
protein homodimerization activity	Orthology	molecular function
mRNA splicing, via spliceosome	Orthology	biological process
regulation of gene expression	Orthology	biological process
cellular response to stress	Orthology	biological process
response to oxidative stress	Orthology	biological process
reproductive process	Orthology	biological process

GO (Orthology)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
regulation of alternative mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
single-stranded RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
mRNA processing	Hs	biological process
multicellular organism development	Hs	biological process
poly(U) RNA binding	Hs	molecular function
RNA splicing	Hs	biological process
nuclear speck	Hs	cellular component
cell differentiation	Hs	biological process
cellular response to oxidative stress	Hs	biological process
protein homodimerization activity	Hs	molecular function
meiotic cell cycle	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	106	7.16e-28
RNA binding	Hs	molecular function	106	7.16e-28
single-stranded RNA binding	Hs	molecular function	106	7.16e-28
protein binding	Hs	molecular function	106	7.16e-28
nucleus	Hs	cellular component	106	7.16e-28
nucleoplasm	Hs	cellular component	106	7.16e-28
poly(U) RNA binding	Hs	molecular function	90.5	7.92e-22
nuclear speck	Hs	cellular component	90.5	7.92e-22
protein homodimerization activity	Hs	molecular function	90.5	7.92e-22

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	2.55E-25