Gene Card
Best human hits
LEMD3; RBM23; RBM39
Species
Unique Gene ID
Phfumi.g00007003
Gene Model ID
Phfumi.CG.MTP2014.S5564.g07003
Location
S5564:864..2274
Transcript Models and Sequences
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| RRM_dom | Pfam | RNA recognition motif domain |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| RBM39_SF | TIGRFAM | Splicing factor, RBM39-like |
| RRM_dom | SMART | RNA recognition motif domain |
| RBM39_linker | Pfam | Splicing factor RBM39, linker |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
GOSlim
20 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleic acid binding | Orthology | molecular function |
| DNA binding | Blast | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| microtubule organizing center | Orthology | cellular component |
| transcription, DNA-templated | Orthology | biological process |
| regulation of transcription, DNA-templated | Orthology | biological process |
| RNA processing | Orthology | biological process |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| microtubule cytoskeleton | Orthology | cellular component |
| membrane | Orthology | cellular component |
| integral component of membrane | Blast | cellular component |
| nuclear speck | Orthology | cellular component |
| nuclear membrane | Blast | cellular component |
| macromolecular complex | Orthology | cellular component |
| organelle inner membrane | Blast | cellular component |
| chromatin binding | Blast | molecular function |
GO (Orthology)
15 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| microtubule organizing center | Hs | cellular component |
| transcription, DNA-templated | Hs | biological process |
| regulation of transcription, DNA-templated | Hs | biological process |
| RNA processing | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| microtubule cytoskeleton | Hs | cellular component |
| membrane | Hs | cellular component |
| nuclear speck | Hs | cellular component |
| macromolecular complex | Hs | cellular component |
GO (Blast)
16 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 487 | 2.52e-169 |
| DNA binding | Hs | molecular function | 98.2 | 1.11e-21 |
| RNA binding | Hs | molecular function | 487 | 2.52e-169 |
| protein binding | Hs | molecular function | 487 | 2.52e-169 |
| nucleus | Hs | cellular component | 487 | 2.52e-169 |
| nuclear inner membrane | Hs | cellular component | 98.2 | 1.11e-21 |
| integral component of nuclear inner membrane | Hs | cellular component | 98.2 | 1.11e-21 |
| nucleoplasm | Hs | cellular component | 487 | 2.52e-169 |
| microtubule organizing center | Hs | cellular component | 487 | 2.52e-169 |
| microtubule cytoskeleton | Hs | cellular component | 487 | 2.52e-169 |
| membrane | Hs | cellular component | 323 | 1.10e-106 |
| integral component of membrane | Hs | cellular component | 98.2 | 1.11e-21 |
| nuclear speck | Hs | cellular component | 487 | 2.52e-169 |
| chromatin DNA binding | Hs | molecular function | 98.2 | 1.11e-21 |
| nuclear membrane | Hs | cellular component | 98.2 | 1.11e-21 |
| macromolecular complex | Hs | cellular component | 487 | 2.52e-169 |
GO (InterProScan)
4 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SMART | molecular function | 1.3E-28 |
| RNA binding | TIGRFAM | molecular function | 4.2E-106 |
| nucleus | TIGRFAM | cellular component | 4.2E-106 |
| mRNA processing | TIGRFAM | biological process | 4.2E-106 |
