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GENE CARD

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Gene Card

Best human hits

SMARCB1

Species

P.fumigata

Unique Gene ID

Phfumi.g00002327

Gene Model ID

Phfumi.CG.MTP2014.S569.g02327

Location

S569:4244..7907

Transcript Models and Sequences

  Phfumi.CG.MTP2014.S569.g02327.01.t

External Database Gene Card

External database links

No result

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Genomicus Synteny Browser

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Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
SNF5 PANTHER SNF5/SMARCB1/INI1
SNF5 Pfam SNF5/SMARCB1/INI1
Sfh1/SNF5 PIRSF Chromatin-remodeling complex component Sfh1/SNF5

GOSlim

31 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
DNA binding Orthology molecular function
transcription coactivator activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
DNA repair Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
cell cycle Orthology biological process
nervous system development Orthology biological process
negative regulation of cell proliferation Orthology biological process
cell differentiation Orthology biological process
macromolecular complex Orthology cellular component
intracellular membrane-bounded organelle Orthology cellular component
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
DNA-templated transcription, initiation Orthology biological process
transcription regulatory region sequence-specific DNA binding Orthology molecular function
organelle organization Orthology biological process
DNA metabolic process Orthology biological process
transcription factor binding Orthology molecular function
chromatin binding Orthology molecular function
macromolecular complex binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
neuron part Orthology cellular component
positive regulation of transcription, DNA-templated Orthology biological process

GO (Orthology)

39 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear chromosome Hs cellular component
nuclear chromatin Hs cellular component
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
RNA polymerase I CORE element sequence-specific DNA binding Hs molecular function
RNA polymerase I transcriptional preinitiation complex assembly Hs biological process
fibrillar center Hs cellular component
XY body Hs cellular component
p53 binding Hs molecular function
DNA binding Hs molecular function
transcription coactivator activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
DNA repair Hs biological process
chromatin organization Hs biological process
nucleosome disassembly Hs biological process
chromatin remodeling Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
cell cycle Hs biological process
nervous system development Hs biological process
negative regulation of cell proliferation Hs biological process
DNA integration Hs biological process
viral process Hs biological process
SWI/SNF complex Hs cellular component
cell differentiation Hs biological process
Tat protein binding Hs molecular function
nucleosomal DNA binding Hs molecular function
macromolecular complex Hs cellular component
ATP-dependent chromatin remodeling Hs biological process
intracellular membrane-bounded organelle Hs cellular component
positive regulation of transcription from RNA polymerase II promoter Hs biological process
positive regulation of sequence-specific DNA binding transcription factor activity Hs biological process
npBAF complex Hs cellular component
nBAF complex Hs cellular component
positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromosome Hs cellular component 562 0.0
nuclear chromatin Hs cellular component 562 0.0
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 562 0.0
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 562 0.0
RNA polymerase I CORE element sequence-specific DNA binding Hs molecular function 562 0.0
fibrillar center Hs cellular component 562 0.0
XY body Hs cellular component 562 0.0
p53 binding Hs molecular function 562 0.0
DNA binding Hs molecular function 562 0.0
transcription coactivator activity Hs molecular function 562 0.0
protein binding Hs molecular function 562 0.0
nucleus Hs cellular component 562 0.0
nucleoplasm Hs cellular component 562 0.0
nucleolus Hs cellular component 562 0.0
SWI/SNF complex Hs cellular component 562 0.0
Tat protein binding Hs molecular function 562 0.0
nucleosomal DNA binding Hs molecular function 562 0.0
macromolecular complex Hs cellular component 562 0.0
intracellular membrane-bounded organelle Hs cellular component 562 0.0
npBAF complex Hs cellular component 562 0.0
nBAF complex Hs cellular component 562 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nuclear chromosome PANTHER cellular component 5.2E-108
chromatin remodeling PIRSF biological process 2.4E-139

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