Aniseed - Gene card

Gene Card

Best human hits

FMR1; FXR1; FXR2

Species

P.fumigata

Unique Gene ID

Phfumi.g00007812

Gene Model ID

Phfumi.CG.MTP2014.S7613.g07812

Location

S7613:764..8574

Transcript Models and Sequences

Phfumi.CG.MTP2014.S7613.g07812.01.t
Phfumi.CG.MTP2014.S7613.g07812.02.t
Phfumi.CG.MTP2014.S7613.g07812.03.t
Phfumi.CG.MTP2014.S7613.g07812.04.t
Phfumi.CG.MTP2014.S7613.g07812.05.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
KH_dom_type_1_sf	Gene3D	K Homology domain, type 1 superfamily
KH_dom_type_1	Pfam	K Homology domain, type 1
KH_dom_type_1_sf	SUPERFAMILY	K Homology domain, type 1 superfamily
KH_dom	SMART	K Homology domain

GOSlim

70 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Orthology	cellular component
mRNA processing	Orthology	biological process
apoptotic process	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
multicellular organism development	Orthology	biological process
nervous system development	Orthology	biological process
microtubule binding	Orthology	molecular function
RNA splicing	Orthology	biological process
membrane	Orthology	cellular component
cell junction	Orthology	cellular component
cell differentiation	Orthology	biological process
axon	Orthology	cellular component
identical protein binding	Orthology	molecular function
protein homodimerization activity	Orthology	molecular function
cell projection	Orthology	cellular component
neuron projection	Orthology	cellular component
synapse	Orthology	cellular component
postsynaptic membrane	Orthology	cellular component
protein heterodimerization activity	Orthology	molecular function
perinuclear region of cytoplasm	Orthology	cellular component
extracellular exosome	Orthology	cellular component
postsynapse	Orthology	cellular component
mRNA splicing, via spliceosome	Orthology	biological process
regulation of gene expression	Orthology	biological process
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
organelle organization	Orthology	biological process
membrane organization	Orthology	biological process
macromolecular complex	Orthology	cellular component
intracellular part	Orthology	cellular component
animal organ development	Orthology	biological process
cytoplasmic part	Orthology	cellular component
organelle	Orthology	cellular component
neuron part	Orthology	cellular component
nuclear body	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
plasma membrane part	Orthology	cellular component
ribosome	Orthology	cellular component
cell projection part	Orthology	cellular component
cellular process	Orthology	biological process
plasma membrane region	Orthology	cellular component
cytoskeletal part	Orthology	cellular component
protein phosphorylation	Orthology	biological process
synaptic membrane	Orthology	cellular component
macromolecular complex binding	Orthology	molecular function
organelle part	Orthology	cellular component
neuronal cell body	Orthology	cellular component
mRNA catabolic process	Orthology	biological process
synapse part	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process
translational initiation	Orthology	biological process
regulation of signaling	Orthology	biological process
chemical synaptic transmission	Orthology	biological process
organic substance transport	Orthology	biological process
cell projection assembly	Orthology	biological process
neuron projection development	Orthology	biological process
transmembrane transport	Orthology	biological process
metal ion transport	Orthology	biological process
regulation of molecular function	Orthology	biological process
proteolysis	Orthology	biological process
intracellular transport	Orthology	biological process

GO (Orthology)

104 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
regulation of alternative mRNA splicing, via spliceosome	Hs	biological process
chromosome, centromeric region	Hs	cellular component
positive regulation of receptor internalization	Hs	biological process
G-quadruplex RNA binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
chromatin binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
chromosome	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
polysome	Hs	cellular component
mRNA cap binding complex	Hs	cellular component
plasma membrane	Hs	cellular component
mRNA processing	Hs	biological process
regulation of translation	Hs	biological process
apoptotic process	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
multicellular organism development	Hs	biological process
nervous system development	Hs	biological process
muscle organ development	Hs	biological process
microtubule binding	Hs	molecular function
poly(U) RNA binding	Hs	molecular function
RNA splicing	Hs	biological process
chromocenter	Hs	cellular component
cytoplasmic stress granule	Hs	cellular component
postsynaptic density	Hs	cellular component
Cajal body	Hs	cellular component
membrane	Hs	cellular component
viral process	Hs	biological process
negative regulation of translation	Hs	biological process
viral replication complex	Hs	cellular component
extrinsic component of plasma membrane	Hs	cellular component
cytosolic large ribosomal subunit	Hs	cellular component
cell junction	Hs	cellular component
cell differentiation	Hs	biological process
translation repressor activity	Hs	molecular function
axon	Hs	cellular component
dendrite	Hs	cellular component
growth cone	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
gene silencing by RNA	Hs	biological process
translation initiation factor binding	Hs	molecular function
filopodium tip	Hs	cellular component
SMN complex	Hs	cellular component
positive regulation of histone phosphorylation	Hs	biological process
RNA strand annealing activity	Hs	molecular function
poly(G) binding	Hs	molecular function
cellular response to UV	Hs	biological process
methylated histone binding	Hs	molecular function
siRNA binding	Hs	molecular function
miRNA binding	Hs	molecular function
RNA stem-loop binding	Hs	molecular function
ribonucleoprotein granule	Hs	cellular component
cytoplasmic ribonucleoprotein granule	Hs	cellular component
presynaptic membrane	Hs	cellular component
polysomal ribosome	Hs	cellular component
identical protein binding	Hs	molecular function
protein homodimerization activity	Hs	molecular function
cell projection	Hs	cellular component
neuron projection	Hs	cellular component
ribosome binding	Hs	molecular function
costamere	Hs	cellular component
dendritic spine	Hs	cellular component
perikaryon	Hs	cellular component
regulation of mRNA stability	Hs	biological process
axon terminus	Hs	cellular component
ion channel binding	Hs	molecular function
synapse	Hs	cellular component
postsynaptic membrane	Hs	cellular component
positive regulation of translation	Hs	biological process
negative regulation of translational initiation	Hs	biological process
regulation of neurotransmitter secretion	Hs	biological process
protein heterodimerization activity	Hs	molecular function
mRNA 5'-UTR binding	Hs	molecular function
perinuclear region of cytoplasm	Hs	cellular component
mRNA transport	Hs	biological process
regulation of filopodium assembly	Hs	biological process
positive regulation of filopodium assembly	Hs	biological process
regulation of gene silencing by miRNA	Hs	biological process
positive regulation of dendritic spine development	Hs	biological process
extracellular exosome	Hs	cellular component
dynein complex binding	Hs	molecular function
neuronal ribonucleoprotein granule	Hs	cellular component
glial cell projection	Hs	cellular component
cellular response to virus	Hs	biological process
presynapse	Hs	cellular component
postsynapse	Hs	cellular component
negative regulation of voltage-gated calcium channel activity	Hs	biological process
positive regulation of proteasomal protein catabolic process	Hs	biological process
dendritic filopodium	Hs	cellular component
messenger ribonucleoprotein complex	Hs	cellular component
growth cone filopodium	Hs	cellular component
sequence-specific mRNA binding	Hs	molecular function
ribonucleoprotein complex	Hs	cellular component
negative regulation of synaptic vesicle exocytosis	Hs	biological process
positive regulation of gene silencing by miRNA	Hs	biological process
negative regulation of cytoplasmic translation	Hs	biological process
positive regulation of response to DNA damage stimulus	Hs	biological process

GO (Blast)

72 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromosome, centromeric region	Hs	cellular component	125	8.85e-31
G-quadruplex RNA binding	Hs	molecular function	197	9.51e-57
nucleic acid binding	Hs	molecular function	197	9.51e-57
chromatin binding	Hs	molecular function	125	8.85e-31
RNA binding	Hs	molecular function	197	9.51e-57
mRNA binding	Hs	molecular function	197	9.51e-57
mRNA 3'-UTR binding	Hs	molecular function	197	9.51e-57
protein binding	Hs	molecular function	197	9.51e-57
nucleus	Hs	cellular component	197	9.51e-57
nucleoplasm	Hs	cellular component	125	8.85e-31
chromosome	Hs	cellular component	125	8.85e-31
nucleolus	Hs	cellular component	197	9.51e-57
cytoplasm	Hs	cellular component	197	9.51e-57
cytosol	Hs	cellular component	197	9.51e-57
polysome	Hs	cellular component	197	9.51e-57
mRNA cap binding complex	Hs	cellular component	125	8.85e-31
plasma membrane	Hs	cellular component	125	8.85e-31
microtubule binding	Hs	molecular function	125	8.85e-31
poly(U) RNA binding	Hs	molecular function	125	8.85e-31
chromocenter	Hs	cellular component	125	8.85e-31
cytoplasmic stress granule	Hs	cellular component	125	8.85e-31
postsynaptic density	Hs	cellular component	125	8.85e-31
Cajal body	Hs	cellular component	125	8.85e-31
membrane	Hs	cellular component	197	9.51e-57
viral replication complex	Hs	cellular component	125	8.85e-31
extrinsic component of plasma membrane	Hs	cellular component	125	8.85e-31
cytosolic large ribosomal subunit	Hs	cellular component	194	4.14e-55
cell junction	Hs	cellular component	125	8.85e-31
translation repressor activity	Hs	molecular function	125	8.85e-31
axon	Hs	cellular component	197	9.51e-57
dendrite	Hs	cellular component	197	9.51e-57
growth cone	Hs	cellular component	125	8.85e-31
intracellular ribonucleoprotein complex	Hs	cellular component	125	8.85e-31
translation initiation factor binding	Hs	molecular function	125	8.85e-31
filopodium tip	Hs	cellular component	125	8.85e-31
SMN complex	Hs	cellular component	125	8.85e-31
RNA strand annealing activity	Hs	molecular function	197	9.51e-57
poly(G) binding	Hs	molecular function	125	8.85e-31
methylated histone binding	Hs	molecular function	125	8.85e-31
siRNA binding	Hs	molecular function	125	8.85e-31
miRNA binding	Hs	molecular function	125	8.85e-31
RNA stem-loop binding	Hs	molecular function	125	8.85e-31
ribonucleoprotein granule	Hs	cellular component	197	9.51e-57
cytoplasmic ribonucleoprotein granule	Hs	cellular component	125	8.85e-31
presynaptic membrane	Hs	cellular component	125	8.85e-31
polysomal ribosome	Hs	cellular component	125	8.85e-31
identical protein binding	Hs	molecular function	194	4.14e-55
protein homodimerization activity	Hs	molecular function	197	9.51e-57
cell projection	Hs	cellular component	125	8.85e-31
neuron projection	Hs	cellular component	125	8.85e-31
ribosome binding	Hs	molecular function	125	8.85e-31
costamere	Hs	cellular component	197	9.51e-57
dendritic spine	Hs	cellular component	197	9.51e-57
perikaryon	Hs	cellular component	125	8.85e-31
axon terminus	Hs	cellular component	125	8.85e-31
ion channel binding	Hs	molecular function	125	8.85e-31
synapse	Hs	cellular component	125	8.85e-31
postsynaptic membrane	Hs	cellular component	125	8.85e-31
protein heterodimerization activity	Hs	molecular function	197	9.51e-57
mRNA 5'-UTR binding	Hs	molecular function	125	8.85e-31
perinuclear region of cytoplasm	Hs	cellular component	197	9.51e-57
extracellular exosome	Hs	cellular component	194	4.14e-55
dynein complex binding	Hs	molecular function	125	8.85e-31
neuronal ribonucleoprotein granule	Hs	cellular component	125	8.85e-31
glial cell projection	Hs	cellular component	125	8.85e-31
presynapse	Hs	cellular component	125	8.85e-31
postsynapse	Hs	cellular component	125	8.85e-31
dendritic filopodium	Hs	cellular component	125	8.85e-31
messenger ribonucleoprotein complex	Hs	cellular component	125	8.85e-31
growth cone filopodium	Hs	cellular component	125	8.85e-31
sequence-specific mRNA binding	Hs	molecular function	125	8.85e-31
ribonucleoprotein complex	Hs	cellular component	125	8.85e-31

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	0.0034
RNA binding	Gene3D	molecular function	9.0E-25
mRNA binding	PANTHER	molecular function	1.9E-83