Login
Help

Submit your Data

  1. Gene 'Phmamm.CG.MTP2014.S1...'

Gene Card

Best human hits

COL21A1; ITGA11; ITGAX

Species

P.mammillata

Unique Gene ID

Phmamm.g00000018

Gene Model ID

Phmamm.CG.MTP2014.S1.g00018

Location

S1:176098..180499

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S1.g00018.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

    Gene Annotations

    InterPro

    6 results

    IPR Term Analysis Definition
    Integrin_alpha_N Gene3D Integrin alpha, N-terminal
    VWF_A ProSiteProfiles von Willebrand factor, type A
    vWFA_dom_sf Gene3D von Willebrand factor A-like domain superfamily
    VWF_A SMART von Willebrand factor, type A
    vWFA_dom_sf SUPERFAMILY von Willebrand factor A-like domain superfamily
    VWF_A Pfam von Willebrand factor, type A

    GOSlim

    24 results

    GO Term Annotation Origin Type
    protein binding Blast molecular function
    extracellular region Blast cellular component
    cytoplasm Blast cellular component
    endoplasmic reticulum lumen Blast cellular component
    cytosol Blast cellular component
    plasma membrane Blast cellular component
    focal adhesion Blast cellular component
    cell adhesion Blast biological process
    cell surface Blast cellular component
    membrane Blast cellular component
    integral component of membrane Blast cellular component
    metal ion binding Blast molecular function
    macromolecular complex binding Blast molecular function
    macromolecular complex Blast cellular component
    integral component of plasma membrane Blast cellular component
    plasma membrane part Blast cellular component
    intracellular organelle part Blast cellular component
    whole membrane Blast cellular component
    cytoplasmic vesicle Blast cellular component
    endomembrane system Blast cellular component
    bounding membrane of organelle Blast cellular component
    extracellular region part Blast cellular component
    cell surface receptor signaling pathway Blast biological process
    transmembrane signaling receptor activity Blast molecular function

    GO (Orthology)

    No result

    GO Term SpeciesCe = Caenorhabditis elegans
    Dr = Danio rerio
    Dm = Drosophila melanogaster
    Gg = Gallus gallus
    Hs = Homo sapiens
    Mm = Mus musculus
    Sc = Saccharomyces cerevisiae
    Type

    GO (Blast)

    24 results

    GO Term SpeciesCe = Caenorhabditis elegans
    Dr = Danio rerio
    Dm = Drosophila melanogaster
    Gg = Gallus gallus
    Hs = Homo sapiens
    Mm = Mus musculus
    Sc = Saccharomyces cerevisiae
    Type Score E-value
    receptor activity Hs molecular function 75.1 2.24e-14
    protein binding Hs molecular function 75.1 2.24e-14
    collagen binding Hs molecular function 81.3 2.13e-16
    extracellular region Hs cellular component 78.2 2.34e-15
    proteinaceous extracellular matrix Hs cellular component 78.2 2.34e-15
    collagen trimer Hs cellular component 78.2 2.34e-15
    cytoplasm Hs cellular component 78.2 2.34e-15
    endoplasmic reticulum lumen Hs cellular component 78.2 2.34e-15
    cytosol Hs cellular component 78.2 2.34e-15
    plasma membrane Hs cellular component 81.3 2.13e-16
    focal adhesion Hs cellular component 81.3 2.13e-16
    integrin complex Hs cellular component 81.3 2.13e-16
    external side of plasma membrane Hs cellular component 75.1 2.24e-14
    cell surface Hs cellular component 75.1 2.24e-14
    membrane Hs cellular component 81.3 2.13e-16
    integral component of membrane Hs cellular component 81.3 2.13e-16
    secretory granule membrane Hs cellular component 75.1 2.24e-14
    extracellular matrix Hs cellular component 78.2 2.34e-15
    integrin alpha11-beta1 complex Hs cellular component 81.3 2.13e-16
    collagen receptor activity Hs molecular function 81.3 2.13e-16
    metal ion binding Hs molecular function 81.3 2.13e-16
    tertiary granule membrane Hs cellular component 75.1 2.24e-14
    collagen binding involved in cell-matrix adhesion Hs molecular function 81.3 2.13e-16
    ficolin-1-rich granule membrane Hs cellular component 75.1 2.24e-14

    GO (InterProScan)

    No result

    GO Term Analysis Type e-value





    By clicking "SEND", you accept the terms of our Privacy Policy.

    You may choose to prevent this website from aggregating and analyzing the actions you take here. Doing so will protect your privacy, but will also prevent the owner from learning from your actions and creating a better experience for you and other users.