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GENE CARD

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Gene Card

Best human hits

EXD1; EXD3; EXOSC10

Species

P.mammillata

Unique Gene ID

Phmamm.g00000420

Gene Model ID

Phmamm.CG.MTP2014.S10.g00420

Location

S10:147986..156400

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

23 results

AHC0AAA26YB08

Plate: Plate_26_B08

AHC0AAA4YD06

Plate: Plate_4_D06

AHC0AAA6YL03

Plate: Plate_6_L03

AHC0AAA39YF02

Plate: Plate_39_F02

AHC0AAA39YJ07

Plate: Plate_39_J07

AHC0AAA48YP16

Plate: Plate_48_P16

AHC0AAA50YF07

Plate: Plate_50_F07

AHC0AAA53YE11

Plate: Plate_53_E11

AHC0AAA62YD05

Plate: Plate_62_D05

AHC0AAA70YJ09

Plate: Plate_70_J09

AHC0AAA71YP16

Plate: Plate_71_P16

AHC0AAA75YG02

Plate: Plate_75_G02

AHC0AAA140YO01

Plate: Plate_140_O01

AHC0AAA144YA09

Plate: Plate_144_A09

AHC0AAA154YP10

Plate: Plate_154_P10

AHC0AAA217YM10

Plate: Plate_217_M10

AHC0AAA233YJ06

Plate: Plate_233_J06

AHC0AAA244YM05

Plate: Plate_244_M05

AHC0AAA253YJ06

Plate: Plate_253_J06

AHC0AAA264YH08

Plate: Plate_264_H08

AHC0AAA266YP05

Plate: Plate_266_P05

AHC0AAA39YH04

Plate: Plate_39_H04

AHC0AAA39YJ05

Plate: Plate_39_J05

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
3'-5'_exonuclease_dom SMART 3'-5' exonuclease domain
HRDC_dom Pfam HRDC domain
HRDC-like_sf SUPERFAMILY HRDC-like superfamily
RNaseH-like_sf SUPERFAMILY Ribonuclease H-like superfamily
HRDC_dom SMART HRDC domain
Exosome-assoc_fac_Rrp6_N Pfam Exosome-associated factor Rrp6, N-terminal
HRDC_dom ProSiteProfiles HRDC domain
3'-5'_exonuclease_dom Pfam 3'-5' exonuclease domain

GOSlim

32 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
nuclear-transcribed mRNA catabolic process Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
catalytic activity Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
nucleobase-containing compound metabolic process Orthology biological process
RNA processing Orthology biological process
membrane Orthology cellular component
hydrolase activity Orthology molecular function
protein homodimerization activity Blast molecular function
cellular metabolic process Orthology biological process
metal ion binding Blast molecular function
RNA metabolic process Orthology biological process
nuclear lumen Orthology cellular component
macromolecular complex Orthology cellular component
intracellular part Orthology cellular component
organelle organization Orthology biological process
DNA metabolic process Orthology biological process
transferase activity, transferring phosphorus-containing groups Orthology molecular function
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
RNA catabolic process Orthology biological process
mRNA processing Orthology biological process
cytoplasmic part Blast cellular component

GO (Orthology)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
3'-5'-exoribonuclease activity Hs molecular function
nuclear exosome (RNase complex) Hs cellular component
exosome (RNase complex) Hs cellular component
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
maturation of 5.8S rRNA Hs biological process
nuclear-transcribed mRNA catabolic process Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
catalytic activity Hs molecular function
nuclease activity Hs molecular function
exonuclease activity Hs molecular function
exoribonuclease activity Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
nucleobase-containing compound metabolic process Hs biological process
rRNA processing Hs biological process
RNA processing Hs biological process
3'-5' exonuclease activity Hs molecular function
membrane Hs cellular component
hydrolase activity Hs molecular function
negative regulation of telomere maintenance via telomerase Hs biological process
transcriptionally active chromatin Hs cellular component
cellular metabolic process Hs biological process
telomerase RNA binding Hs molecular function
nuclear mRNA surveillance Hs biological process
CUT catabolic process Hs biological process
nuclear polyadenylation-dependent rRNA catabolic process Hs biological process
nuclear retention of unspliced pre-mRNA at the site of transcription Hs biological process
nucleic acid phosphodiester bond hydrolysis Hs biological process
RNA phosphodiester bond hydrolysis, exonucleolytic Hs biological process

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 567 0.0
3'-5'-exoribonuclease activity Hs molecular function 567 0.0
nuclear exosome (RNase complex) Hs cellular component 567 0.0
exosome (RNase complex) Hs cellular component 567 0.0
nucleic acid binding Hs molecular function 567 0.0
RNA binding Hs molecular function 567 0.0
catalytic activity Hs molecular function 567 0.0
nuclease activity Hs molecular function 567 0.0
exonuclease activity Hs molecular function 567 0.0
exoribonuclease activity Hs molecular function 567 0.0
protein binding Hs molecular function 567 0.0
intracellular Hs cellular component 567 0.0
nucleus Hs cellular component 567 0.0
nucleoplasm Hs cellular component 567 0.0
nucleolus Hs cellular component 567 0.0
cytoplasm Hs cellular component 567 0.0
cytosol Hs cellular component 567 0.0
3'-5' exonuclease activity Hs molecular function 567 0.0
membrane Hs cellular component 567 0.0
hydrolase activity Hs molecular function 567 0.0
transcriptionally active chromatin Hs cellular component 567 0.0
protein homodimerization activity Hs molecular function 41.6 0.002
P granule Hs cellular component 41.6 0.002
metal ion binding Hs molecular function 43.1 6.43e-04
telomerase RNA binding Hs molecular function 567 0.0
PET complex Hs cellular component 41.6 0.002

GO (InterProScan)

9 results

GO Term Analysis Type e-value
nucleotide binding SUPERFAMILY molecular function 1.44E-23
nuclear exosome (RNase complex) Pfam cellular component 3.7E-14
nucleic acid binding Pfam molecular function 2.3E-46
catalytic activity SUPERFAMILY molecular function 1.44E-23
intracellular SMART cellular component 1.1E-13
nucleobase-containing compound metabolic process Pfam biological process 2.3E-46
RNA processing Pfam biological process 3.7E-14
3'-5' exonuclease activity Pfam molecular function 2.3E-46
cellular metabolic process SUPERFAMILY biological process 1.44E-23