Gene Card
Best human hits
AP3B2; AP3D1; COPB1
Species
Unique Gene ID
Phmamm.g00013339
Gene Model ID
Phmamm.CG.MTP2014.S1027.g13339
Location
S1027:42117..56312
Transcript Models and Sequences
Phmamm.CG.MTP2014.S1027.g13339.01.t
Phmamm.CG.MTP2014.S1027.g13339.02.t
Genoscope Yasuo Villefranche
13 results
AHC0AAA10YI21
Plate: Plate_10_I21
AHC0AAA33YG01
Plate: Plate_33_G01
AHC0AAA34YE15
Plate: Plate_34_E15
AHC0AAA42YG12
Plate: Plate_42_G12
AHC0AAA73YB22
Plate: Plate_73_B22
AHC0AAA105YH08
Plate: Plate_105_H08
AHC0AAA126YH19
Plate: Plate_126_H19
AHC0AAA136YD20
Plate: Plate_136_D20
AHC0AAA89YA13
Plate: Plate_89_A13
AHC0AAA163YI11
Plate: Plate_163_I11
AHC0AAA201YC13
Plate: Plate_201_C13
AHC0AAA210YM18
Plate: Plate_210_M18
AHC0AAA252YB22
Plate: Plate_252_B22
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
7 results
| IPR Term | Analysis | Definition |
|---|---|---|
| ARM-type_fold | SUPERFAMILY | Armadillo-type fold |
| ARM-like | Gene3D | Armadillo-like helical |
| COPB1_appendage_platform_dom | Pfam | Coatomer beta subunit, appendage platform domain |
| COPB1 | PANTHER | Coatomer beta subunit (COPB1) |
| Clathrin/coatomer_adapt-like_N | Pfam | Clathrin/coatomer adaptor, adaptin-like, N-terminal |
| Coatomer_bsu_C | Pfam | Coatomer beta subunit, C-terminal |
| COPB1 | PIRSF | Coatomer beta subunit (COPB1) |
GOSlim
30 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| Golgi membrane | Orthology | cellular component |
| structural molecule activity | Orthology | molecular function |
| binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| cytoplasm | Orthology | cellular component |
| lysosomal membrane | Blast | cellular component |
| endoplasmic reticulum membrane | Orthology | cellular component |
| Golgi apparatus | Orthology | cellular component |
| cytosol | Orthology | cellular component |
| plasma membrane | Orthology | cellular component |
| intracellular protein transport | Orthology | biological process |
| protein transport | Orthology | biological process |
| membrane | Orthology | cellular component |
| axon | Blast | cellular component |
| cytoplasmic vesicle | Orthology | cellular component |
| intracellular membrane-bounded organelle | Orthology | cellular component |
| postsynapse | Blast | cellular component |
| cytoplasmic part | Orthology | cellular component |
| intracellular transport | Orthology | biological process |
| membrane part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| whole membrane | Orthology | cellular component |
| bounding membrane of organelle | Orthology | cellular component |
| Golgi apparatus part | Orthology | cellular component |
| endomembrane system | Orthology | cellular component |
| intracellular organelle part | Orthology | cellular component |
| endosome | Blast | cellular component |
| cell projection part | Blast | cellular component |
| synapse part | Blast | cellular component |
| neuron part | Blast | cellular component |
GO (Orthology)
29 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| Golgi membrane | Hs | cellular component |
| structural molecule activity | Hs | molecular function |
| binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| cytoplasm | Hs | cellular component |
| endoplasmic reticulum membrane | Hs | cellular component |
| endoplasmic reticulum-Golgi intermediate compartment | Hs | cellular component |
| Golgi apparatus | Hs | cellular component |
| Golgi-associated vesicle | Hs | cellular component |
| cytosol | Hs | cellular component |
| plasma membrane | Hs | cellular component |
| intracellular protein transport | Hs | biological process |
| ER to Golgi vesicle-mediated transport | Hs | biological process |
| retrograde vesicle-mediated transport, Golgi to ER | Hs | biological process |
| intra-Golgi vesicle-mediated transport | Hs | biological process |
| protein transport | Hs | biological process |
| membrane | Hs | cellular component |
| viral process | Hs | biological process |
| vesicle-mediated transport | Hs | biological process |
| membrane coat | Hs | cellular component |
| COPI vesicle coat | Hs | cellular component |
| transport vesicle | Hs | cellular component |
| COPI-coated vesicle | Hs | cellular component |
| COPI-coated vesicle membrane | Hs | cellular component |
| secretory granule membrane | Hs | cellular component |
| cytoplasmic vesicle | Hs | cellular component |
| intracellular membrane-bounded organelle | Hs | cellular component |
| tertiary granule membrane | Hs | cellular component |
| ficolin-1-rich granule membrane | Hs | cellular component |
GO (Blast)
32 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| Golgi membrane | Hs | cellular component | 1367 | 0.0 |
| structural molecule activity | Hs | molecular function | 1367 | 0.0 |
| transporter activity | Hs | molecular function | 77.8 | 1.88e-14 |
| binding | Hs | molecular function | 1367 | 0.0 |
| protein binding | Hs | molecular function | 1367 | 0.0 |
| cytoplasm | Hs | cellular component | 1367 | 0.0 |
| lysosomal membrane | Hs | cellular component | 77.8 | 1.88e-14 |
| endoplasmic reticulum membrane | Hs | cellular component | 1367 | 0.0 |
| endoplasmic reticulum-Golgi intermediate compartment | Hs | cellular component | 1367 | 0.0 |
| Golgi apparatus | Hs | cellular component | 1367 | 0.0 |
| Golgi-associated vesicle | Hs | cellular component | 1367 | 0.0 |
| cytosol | Hs | cellular component | 1367 | 0.0 |
| plasma membrane | Hs | cellular component | 1367 | 0.0 |
| endosome membrane | Hs | cellular component | 77.8 | 1.88e-14 |
| membrane | Hs | cellular component | 1367 | 0.0 |
| membrane coat | Hs | cellular component | 1367 | 0.0 |
| AP-3 adaptor complex | Hs | cellular component | 77.8 | 1.88e-14 |
| COPI vesicle coat | Hs | cellular component | 1367 | 0.0 |
| transport vesicle | Hs | cellular component | 1367 | 0.0 |
| COPI-coated vesicle | Hs | cellular component | 1367 | 0.0 |
| axon | Hs | cellular component | 77.8 | 1.88e-14 |
| COPI-coated vesicle membrane | Hs | cellular component | 1367 | 0.0 |
| clathrin-coated vesicle membrane | Hs | cellular component | 70.5 | 3.29e-12 |
| secretory granule membrane | Hs | cellular component | 1367 | 0.0 |
| cytoplasmic vesicle | Hs | cellular component | 1367 | 0.0 |
| terminal bouton | Hs | cellular component | 77.8 | 1.88e-14 |
| intracellular membrane-bounded organelle | Hs | cellular component | 1367 | 0.0 |
| tertiary granule membrane | Hs | cellular component | 1367 | 0.0 |
| postsynapse | Hs | cellular component | 77.8 | 1.88e-14 |
| presynaptic endosome | Hs | cellular component | 77.8 | 1.88e-14 |
| ficolin-1-rich granule membrane | Hs | cellular component | 1367 | 0.0 |
| axon cytoplasm | Hs | cellular component | 77.8 | 1.88e-14 |
GO (InterProScan)
7 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| structural molecule activity | Pfam | molecular function | 4.5E-59 |
| binding | SUPERFAMILY | molecular function | 1.73E-77 |
| cytoplasm | PANTHER | cellular component | 0.0 |
| intracellular protein transport | PANTHER | biological process | 0.0 |
| vesicle-mediated transport | Pfam | biological process | 2.1E-111 |
| membrane coat | Pfam | cellular component | 2.1E-111 |
| COPI vesicle coat | Pfam | cellular component | 4.5E-59 |
