Gene Card
Best human hits
LSM10; SNRPD1; SNRPD3
Species
Unique Gene ID
Phmamm.g00013688
Gene Model ID
Phmamm.CG.MTP2014.S1103.g13688
Location
S1103:883..3401
Transcript Models and Sequences
Genoscope Yasuo Villefranche
20 results
AHC0AAA16YE10
Plate: Plate_16_E10
AHC0AAA20YD05
Plate: Plate_20_D05
AHC0AAA5YJ14
Plate: Plate_5_J14
AHC0AAA41YC16
Plate: Plate_41_C16
AHC0AAA41YH18
Plate: Plate_41_H18
AHC0AAA46YB15
Plate: Plate_46_B15
AHC0AAA46YE22
Plate: Plate_46_E22
AHC0AAA79YA02
Plate: Plate_79_A02
AHC0AAA108YJ24
Plate: Plate_108_J24
AHC0AAA138YL16
Plate: Plate_138_L16
AHC0AAA138YL24
Plate: Plate_138_L24
AHC0AAA154YL19
Plate: Plate_154_L19
AHC0AAA99YM15
Plate: Plate_99_M15
AHC0AAA184YO10
Plate: Plate_184_O10
AHC0AAA212YI02
Plate: Plate_212_I02
AHC0AAA214YA06
Plate: Plate_214_A06
AHC0AAA226YM12
Plate: Plate_226_M12
AHC0AAA236YE02
Plate: Plate_236_E02
AHC0AAA252YG20
Plate: Plate_252_G20
AHC0AAA268YK16
Plate: Plate_268_K16
n/a
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
5 results
| IPR Term | Analysis | Definition |
|---|---|---|
| LSM_dom_euk/arc | SMART | LSM domain, eukaryotic/archaea-type |
| LSm4/Sm_D1/D3 | PANTHER | Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3 |
| Sm_D1 | CDD | Small nuclear ribonucleoprotein D1 |
| LSM_dom_sf | SUPERFAMILY | LSM domain superfamily |
| LSM_dom_euk/arc | Pfam | LSM domain, eukaryotic/archaea-type |
GOSlim
18 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| mRNA splicing, via spliceosome | Orthology | biological process |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| cytoplasm | Orthology | cellular component |
| cytosol | Orthology | cellular component |
| RNA processing | Orthology | biological process |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| nuclear body | Blast | cellular component |
| enzyme binding | Blast | molecular function |
| extracellular exosome | Blast | cellular component |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| cytoplasmic part | Orthology | cellular component |
| intracellular transport | Orthology | biological process |
| macromolecular complex binding | Orthology | molecular function |
GO (Orthology)
31 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| commitment complex | Hs | cellular component |
| spliceosomal complex assembly | Hs | biological process |
| spliceosomal snRNP assembly | Hs | biological process |
| mRNA splicing, via spliceosome | Hs | biological process |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| U5 snRNP | Hs | cellular component |
| U1 snRNP | Hs | cellular component |
| U2 snRNP | Hs | cellular component |
| U4 snRNP | Hs | cellular component |
| U12-type spliceosomal complex | Hs | cellular component |
| cytoplasm | Hs | cellular component |
| cytosol | Hs | cellular component |
| RNA processing | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| intracellular ribonucleoprotein complex | Hs | cellular component |
| small nuclear ribonucleoprotein complex | Hs | cellular component |
| methylosome | Hs | cellular component |
| pICln-Sm protein complex | Hs | cellular component |
| SMN-Sm protein complex | Hs | cellular component |
| nuclear import | Hs | biological process |
| U2-type catalytic step 2 spliceosome | Hs | cellular component |
| prespliceosome | Hs | cellular component |
| precatalytic spliceosome | Hs | cellular component |
| catalytic step 2 spliceosome | Hs | cellular component |
| spliceosomal tri-snRNP complex | Hs | cellular component |
| U1 snRNP binding | Hs | molecular function |
GO (Blast)
34 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| commitment complex | Hs | cellular component | 161 | 1.58e-52 |
| RNA binding | Hs | molecular function | 161 | 1.58e-52 |
| protein binding | Hs | molecular function | 161 | 1.58e-52 |
| nucleus | Hs | cellular component | 161 | 1.58e-52 |
| nucleoplasm | Hs | cellular component | 161 | 1.58e-52 |
| spliceosomal complex | Hs | cellular component | 161 | 1.58e-52 |
| U5 snRNP | Hs | cellular component | 161 | 1.58e-52 |
| U7 snRNP | Hs | cellular component | 46.6 | 1.99e-07 |
| U1 snRNP | Hs | cellular component | 161 | 1.58e-52 |
| U2 snRNP | Hs | cellular component | 161 | 1.58e-52 |
| U4 snRNP | Hs | cellular component | 161 | 1.58e-52 |
| U12-type spliceosomal complex | Hs | cellular component | 161 | 1.58e-52 |
| telomerase holoenzyme complex | Hs | cellular component | 43.9 | 2.20e-06 |
| cytoplasm | Hs | cellular component | 161 | 1.58e-52 |
| cytosol | Hs | cellular component | 161 | 1.58e-52 |
| Cajal body | Hs | cellular component | 46.6 | 1.99e-07 |
| nuclear body | Hs | cellular component | 46.6 | 1.99e-07 |
| enzyme binding | Hs | molecular function | 43.9 | 2.20e-06 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 161 | 1.58e-52 |
| small nuclear ribonucleoprotein complex | Hs | cellular component | 161 | 1.58e-52 |
| U2 snRNA binding | Hs | molecular function | 43.9 | 2.20e-06 |
| methylosome | Hs | cellular component | 161 | 1.58e-52 |
| pICln-Sm protein complex | Hs | cellular component | 161 | 1.58e-52 |
| SMN-Sm protein complex | Hs | cellular component | 161 | 1.58e-52 |
| telomerase RNA binding | Hs | molecular function | 43.9 | 2.20e-06 |
| extracellular exosome | Hs | cellular component | 43.9 | 2.20e-06 |
| U2-type catalytic step 2 spliceosome | Hs | cellular component | 161 | 1.58e-52 |
| prespliceosome | Hs | cellular component | 161 | 1.58e-52 |
| precatalytic spliceosome | Hs | cellular component | 161 | 1.58e-52 |
| catalytic step 2 spliceosome | Hs | cellular component | 161 | 1.58e-52 |
| histone pre-mRNA DCP binding | Hs | molecular function | 46.6 | 1.99e-07 |
| U7 snRNA binding | Hs | molecular function | 46.6 | 1.99e-07 |
| spliceosomal tri-snRNP complex | Hs | cellular component | 161 | 1.58e-52 |
| U1 snRNP binding | Hs | molecular function | 161 | 1.58e-52 |
GO (InterProScan)
2 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| spliceosomal snRNP assembly | CDD | biological process | 1.49812E-58 |
| RNA processing | PANTHER | biological process | 1.7E-49 |
