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GENE CARD

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Gene Card

Best human hits

ISY1; ISY1-RAB43

Species

P.mammillata

Unique Gene ID

Phmamm.g00000503

Gene Model ID

Phmamm.CG.MTP2014.S12.g00503

Location

S12:111960..113898

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

16 results

AHC0AAA13YD15

Plate: Plate_13_D15

AHC0AAA35YG16

Plate: Plate_35_G16

AHC0AAA40YO16

Plate: Plate_40_O16

AHC0AAA49YC16

Plate: Plate_49_C16

AHC0AAA59YL12

Plate: Plate_59_L12

AHC0AAA112YF02

Plate: Plate_112_F02

AHC0AAA123YL13

Plate: Plate_123_L13

AHC0AAA143YL13

Plate: Plate_143_L13

AHC0AAA167YA09

Plate: Plate_167_A09

AHC0AAA171YL18

Plate: Plate_171_L18

AHC0AAA174YJ02

Plate: Plate_174_J02

AHC0AAA177YG24

Plate: Plate_177_G24

AHC0AAA201YA06

Plate: Plate_201_A06

AHC0AAA202YO22

Plate: Plate_202_O22

AHC0AAA212YB17

Plate: Plate_212_B17

AHC0AAA255YN04

Plate: Plate_255_N04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Isy1_sf SUPERFAMILY Pre-mRNA-splicing factor Isy1 superfamily
Isy1 PANTHER Pre-mRNA-splicing factor Isy1
Helix_hairpin_bin_sf Gene3D Helix hairpin bin domain superfamily
Isy1 Pfam Pre-mRNA-splicing factor Isy1

GOSlim

12 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
catalytic activity Orthology molecular function
RNA splicing, via transesterification reactions Orthology biological process
macromolecular complex Orthology cellular component
nuclear part Orthology cellular component
DNA repair Orthology biological process

GO (Orthology)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
generation of catalytic spliceosome for second transesterification step Hs biological process
first spliceosomal transesterification activity Hs molecular function
mRNA 3'-splice site recognition Hs biological process
mRNA splicing, via spliceosome Hs biological process
Prp19 complex Hs cellular component
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
transcription-coupled nucleotide-excision repair Hs biological process
mRNA processing Hs biological process
RNA splicing Hs biological process
catalytic step 1 spliceosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component
post-mRNA release spliceosomal complex Hs cellular component
post-spliceosomal complex Hs cellular component

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
first spliceosomal transesterification activity Hs molecular function 331 2.25e-114
Prp19 complex Hs cellular component 331 2.25e-114
RNA binding Hs molecular function 331 2.25e-114
protein binding Hs molecular function 331 2.25e-114
nucleus Hs cellular component 331 2.25e-114
nucleoplasm Hs cellular component 331 2.25e-114
spliceosomal complex Hs cellular component 331 2.25e-114
catalytic step 1 spliceosome Hs cellular component 331 2.25e-114
catalytic step 2 spliceosome Hs cellular component 331 2.25e-114
post-mRNA release spliceosomal complex Hs cellular component 331 2.25e-114
post-spliceosomal complex Hs cellular component 331 2.25e-114

GO (InterProScan)

1 result

GO Term Analysis Type e-value
generation of catalytic spliceosome for second transesterification step PANTHER biological process 1.3E-105