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GENE CARD

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Gene Card

Best human hits

DKC1; TRUB1

Species

P.mammillata

Unique Gene ID

Phmamm.g00003784

Gene Model ID

Phmamm.CG.MTP2014.S127.g03784

Location

S127:112264..117769

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

47 results

AHC0AAA12YI20

Plate: Plate_12_I20

AHC0AAA14YG23

Plate: Plate_14_G23

AHC0AAA14YK10

Plate: Plate_14_K10

AHC0AAA18YH16

Plate: Plate_18_H16

AHC0AAA18YI04

Plate: Plate_18_I04

AHC0AAA22YD24

Plate: Plate_22_D24

AHC0AAA4YJ07

Plate: Plate_4_J07

AHC0AAA5YK24

Plate: Plate_5_K24

AHC0AAA7YE06

Plate: Plate_7_E06

AHC0AAA30YF06

Plate: Plate_30_F06

AHC0AAA33YJ07

Plate: Plate_33_J07

AHC0AAA36YA14

Plate: Plate_36_A14

AHC0AAA47YH12

Plate: Plate_47_H12

AHC0AAA55YI17

Plate: Plate_55_I17

AHC0AAA61YB19

Plate: Plate_61_B19

AHC0AAA65YJ12

Plate: Plate_65_J12

AHC0AAA68YH15

Plate: Plate_68_H15

AHC0AAA104YG15

Plate: Plate_104_G15

AHC0AAA105YD16

Plate: Plate_105_D16

AHC0AAA108YD20

Plate: Plate_108_D20

AHC0AAA109YC22

Plate: Plate_109_C22

AHC0AAA109YL23

Plate: Plate_109_L23

AHC0AAA121YB09

Plate: Plate_121_B09

AHC0AAA121YG01

Plate: Plate_121_G01

AHC0AAA123YG18

Plate: Plate_123_G18

AHC0AAA126YH10

Plate: Plate_126_H10

AHC0AAA127YA14

Plate: Plate_127_A14

AHC0AAA128YP04

Plate: Plate_128_P04

AHC0AAA144YF01

Plate: Plate_144_F01

AHC0AAA156YE13

Plate: Plate_156_E13

AHC0AAA81YJ11

Plate: Plate_81_J11

AHC0AAA85YA07

Plate: Plate_85_A07

AHC0AAA97YL04

Plate: Plate_97_L04

AHC0AAA162YM18

Plate: Plate_162_M18

AHC0AAA164YB07

Plate: Plate_164_B07

AHC0AAA172YP10

Plate: Plate_172_P10

AHC0AAA198YK17

Plate: Plate_198_K17

AHC0AAA209YN11

Plate: Plate_209_N11

AHC0AAA212YK09

Plate: Plate_212_K09

AHC0AAA215YM09

Plate: Plate_215_M09

AHC0AAA220YF12

Plate: Plate_220_F12

AHC0AAA226YG07

Plate: Plate_226_G07

AHC0AAA240YD05

Plate: Plate_240_D05

AHC0AAA256YA22

Plate: Plate_256_A22

AHC0AAA258YI19

Plate: Plate_258_I19

AHC0AAA263YA12

Plate: Plate_263_A12

AHC0AAA55YK19

Plate: Plate_55_K19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
tRNA_PsdUridine_synth_B_fam TIGRFAM tRNA pseudouridine synthase B family
tRNA_PsdUridine_synth_B_fam PANTHER tRNA pseudouridine synthase B family
PUA Pfam PUA domain
PUA_sf Gene3D PUA domain superfamily
PUA-like_sf SUPERFAMILY PUA-like superfamily
Uncharacterised_CHP00451 TIGRFAM Uncharacterised domain CHP00451
PsdUridine_synth_cat_dom_sf SUPERFAMILY Pseudouridine synthase, catalytic domain superfamily
TruB_C Pfam tRNA pseudouridylate synthase B, C-terminal
PUA SMART PUA domain
PUA ProSiteProfiles PUA domain
PsdUridine_synth_N Pfam Pseudouridine synthase II, N-terminal
Dyskerin-like Pfam Dyskerin-like
Dyskerin-like SMART Dyskerin-like

GOSlim

20 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Blast cellular component
RNA processing Orthology biological process
cell proliferation Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
RNA metabolic process Orthology biological process
transferase activity, transferring phosphorus-containing groups Orthology molecular function
DNA metabolic process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
organelle organization Orthology biological process
catalytic activity Orthology molecular function
nuclear body Orthology cellular component
mRNA metabolic process Orthology biological process

GO (Orthology)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
box H/ACA snoRNA 3'-end processing Hs biological process
pseudouridine synthesis Hs biological process
fibrillar center Hs cellular component
telomerase activity Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
telomerase holoenzyme complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
rRNA processing Hs biological process
RNA processing Hs biological process
telomere maintenance via telomerase Hs biological process
cell proliferation Hs biological process
RNA modification Hs biological process
pseudouridine synthase activity Hs molecular function
Cajal body Hs cellular component
membrane Hs cellular component
integral component of membrane Hs cellular component
isomerase activity Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
rRNA pseudouridine synthesis Hs biological process
snRNA pseudouridine synthesis Hs biological process
box H/ACA snoRNP complex Hs cellular component
positive regulation of telomere maintenance via telomerase Hs biological process
box H/ACA snoRNA binding Hs molecular function
ribosome biogenesis Hs biological process
telomerase RNA binding Hs molecular function
box H/ACA scaRNP complex Hs cellular component
box H/ACA telomerase RNP complex Hs cellular component
positive regulation of telomerase RNA localization to Cajal body Hs biological process
mRNA pseudouridine synthesis Hs biological process

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
fibrillar center Hs cellular component 635 0.0
telomerase activity Hs molecular function 635 0.0
RNA binding Hs molecular function 635 0.0
protein binding Hs molecular function 635 0.0
nucleus Hs cellular component 635 0.0
nucleoplasm Hs cellular component 635 0.0
telomerase holoenzyme complex Hs cellular component 635 0.0
nucleolus Hs cellular component 635 0.0
cytoplasm Hs cellular component 635 0.0
mitochondrion Hs cellular component 67.4 3.16e-12
pseudouridine synthase activity Hs molecular function 635 0.0
Cajal body Hs cellular component 635 0.0
membrane Hs cellular component 635 0.0
integral component of membrane Hs cellular component 635 0.0
isomerase activity Hs molecular function 635 0.0
intracellular ribonucleoprotein complex Hs cellular component 635 0.0
box H/ACA snoRNP complex Hs cellular component 635 0.0
box H/ACA snoRNA binding Hs molecular function 635 0.0
telomerase RNA binding Hs molecular function 635 0.0
box H/ACA scaRNP complex Hs cellular component 635 0.0
box H/ACA telomerase RNP complex Hs cellular component 635 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
pseudouridine synthesis SUPERFAMILY biological process 7.67E-77
RNA binding SUPERFAMILY molecular function 7.67E-77
RNA processing PANTHER biological process 1.5E-232
RNA modification SUPERFAMILY biological process 7.67E-77
pseudouridine synthase activity SUPERFAMILY molecular function 7.67E-77