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GENE CARD

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Gene Card

Best human hits

FOXN1; FOXR1

Species

P.mammillata

Unique Gene ID

Phmamm.g00003820

Gene Model ID

Phmamm.CG.MTP2014.S128.g03820

Location

S128:155974..160941

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S128.g03820.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

43 results

AHC0AAA10YI05

Plate: Plate_10_I05

AHC0AAA12YB02

Plate: Plate_12_B02

AHC0AAA23YI18

Plate: Plate_23_I18

AHC0AAA24YB11

Plate: Plate_24_B11

AHC0AAA25YA02

Plate: Plate_25_A02

AHC0AAA26YD11

Plate: Plate_26_D11

AHC0AAA39YB13

Plate: Plate_39_B13

AHC0AAA42YC18

Plate: Plate_42_C18

AHC0AAA44YD22

Plate: Plate_44_D22

AHC0AAA45YP15

Plate: Plate_45_P15

AHC0AAA46YE05

Plate: Plate_46_E05

AHC0AAA58YJ02

Plate: Plate_58_J02

AHC0AAA64YN02

Plate: Plate_64_N02

AHC0AAA66YO01

Plate: Plate_66_O01

AHC0AAA67YO12

Plate: Plate_67_O12

AHC0AAA104YC15

Plate: Plate_104_C15

AHC0AAA108YI04

Plate: Plate_108_I04

AHC0AAA114YG12

Plate: Plate_114_G12

AHC0AAA115YC03

Plate: Plate_115_C03

AHC0AAA117YA24

Plate: Plate_117_A24

AHC0AAA118YB15

Plate: Plate_118_B15

AHC0AAA124YJ13

Plate: Plate_124_J13

AHC0AAA146YB21

Plate: Plate_146_B21

AHC0AAA148YB10

Plate: Plate_148_B10

AHC0AAA149YD05

Plate: Plate_149_D05

AHC0AAA152YC17

Plate: Plate_152_C17

AHC0AAA152YM06

Plate: Plate_152_M06

AHC0AAA153YL18

Plate: Plate_153_L18

AHC0AAA88YC04

Plate: Plate_88_C04

AHC0AAA90YE03

Plate: Plate_90_E03

AHC0AAA90YE11

Plate: Plate_90_E11

AHC0AAA90YN04

Plate: Plate_90_N04

AHC0AAA99YP23

Plate: Plate_99_P23

AHC0AAA168YG11

Plate: Plate_168_G11

AHC0AAA191YI09

Plate: Plate_191_I09

AHC0AAA193YL13

Plate: Plate_193_L13

AHC0AAA196YF10

Plate: Plate_196_F10

AHC0AAA214YO20

Plate: Plate_214_O20

AHC0AAA219YM15

Plate: Plate_219_M15

AHC0AAA235YK18

Plate: Plate_235_K18

AHC0AAA243YJ02

Plate: Plate_243_J02

AHC0AAA258YJ21

Plate: Plate_258_J21

AHC0AAA39YD15

Plate: Plate_39_D15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Fork_head_dom Pfam Fork head domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Fork_head_dom ProSiteProfiles Fork head domain
TF_fork_head_CS_2 ProSitePatterns Fork head domain conserved site 2
Fork_head_dom PRINTS Fork head domain
Fork_head_dom SMART Fork head domain

GOSlim

8 results

GO Term Annotation Origin Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
sequence-specific DNA binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 67.0 4.87e-12
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 66.6 2.21e-11
DNA binding Hs molecular function 67.0 4.87e-12
transcription factor activity, sequence-specific DNA binding Hs molecular function 67.0 4.87e-12
protein binding Hs molecular function 67.0 4.87e-12
nucleus Hs cellular component 67.0 4.87e-12
sequence-specific DNA binding Hs molecular function 67.0 4.87e-12

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding Pfam molecular function 2.9E-18
regulation of transcription, DNA-templated Pfam biological process 2.9E-18
sequence-specific DNA binding Pfam molecular function 2.9E-18