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Gene Card

Best human hits

CLPB; PRPF4; TOR1B

Species

P.mammillata

Unique Gene ID

Phmamm.g00014465

Gene Model ID

Phmamm.CG.MTP2014.S1318.g14465

Location

S1318:298..3003

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S1318.g14465.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

15 results

AHC0AAA11YK08

Plate: Plate_11_K08

AHC0AAA42YI09

Plate: Plate_42_I09

AHC0AAA63YG15

Plate: Plate_63_G15

AHC0AAA63YM21

Plate: Plate_63_M21

AHC0AAA126YP02

Plate: Plate_126_P02

AHC0AAA128YK06

Plate: Plate_128_K06

AHC0AAA152YK05

Plate: Plate_152_K05

AHC0AAA155YB10

Plate: Plate_155_B10

AHC0AAA85YM17

Plate: Plate_85_M17

AHC0AAA87YO10

Plate: Plate_87_O10

AHC0AAA89YF19

Plate: Plate_89_F19

AHC0AAA96YF04

Plate: Plate_96_F04

AHC0AAA172YN03

Plate: Plate_172_N03

AHC0AAA212YJ01

Plate: Plate_212_J01

AHC0AAA260YC11

Plate: Plate_260_C11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

15 results

IPR Term Analysis Definition
PRP4-like_sf SUPERFAMILY PRP4-like superfamily
Clp_ATPase_C Pfam Clp ATPase, C-terminal
ATPase_AAA_core Pfam ATPase, AAA-type, core
Ankyrin_rpt SMART Ankyrin repeat
AAA+_ATPase SMART AAA+ ATPase domain
ClpA/B PRINTS ClpA/B family
PRP4-like Pfam Pre-mRNA processing factor 4 (PRP4)-like
Ankyrin_rpt-contain_sf SUPERFAMILY Ankyrin repeat-containing domain superfamily
Ankyrin_rpt-contain_sf Gene3D Ankyrin repeat-containing domain superfamily
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Ankyrin_rpt Pfam Ankyrin repeat
Ankyrin_rpt-contain_dom ProSiteProfiles Ankyrin repeat-containing domain
Ankyrin_rpt ProSiteProfiles Ankyrin repeat
PRP4-like SMART Pre-mRNA processing factor 4 (PRP4)-like
Ankyrin_rpt-contain_dom CDD Ankyrin repeat-containing domain

GOSlim

21 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Blast cellular component
nuclear envelope Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
mitochondrion Orthology cellular component
endoplasmic reticulum Blast cellular component
endoplasmic reticulum lumen Blast cellular component
membrane Blast cellular component
nuclear speck Blast cellular component
hydrolase activity Orthology molecular function
nuclear membrane Blast cellular component
extracellular exosome Blast cellular component
nucleoside-triphosphatase activity Orthology molecular function
cellular response to stress Orthology biological process
nuclear part Blast cellular component
macromolecular complex Blast cellular component
nuclear body Blast cellular component
RNA binding Blast molecular function

GO (Orthology)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nucleotide binding Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
mitochondrion Hs cellular component
hydrolase activity Hs molecular function
ATPase activity Hs molecular function
cellular response to heat Hs biological process

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nucleotide binding Hs molecular function 506 2.53e-172
protein binding Hs molecular function 506 2.53e-172
ATP binding Hs molecular function 506 2.53e-172
nucleus Hs cellular component 101 1.46e-22
nuclear envelope Hs cellular component 57.0 1.12e-08
nucleoplasm Hs cellular component 101 1.46e-22
spliceosomal complex Hs cellular component 101 1.46e-22
cytoplasm Hs cellular component 57.0 1.12e-08
mitochondrion Hs cellular component 506 2.53e-172
endoplasmic reticulum Hs cellular component 57.0 1.12e-08
endoplasmic reticulum lumen Hs cellular component 57.0 1.12e-08
Cajal body Hs cellular component 101 1.46e-22
membrane Hs cellular component 57.0 1.12e-08
nuclear speck Hs cellular component 101 1.46e-22
hydrolase activity Hs molecular function 506 2.53e-172
ATPase activity Hs molecular function 506 2.53e-172
U6 snRNA binding Hs molecular function 101 1.46e-22
U4 snRNA binding Hs molecular function 101 1.46e-22
nuclear membrane Hs cellular component 57.0 1.12e-08
U4/U6 x U5 tri-snRNP complex Hs cellular component 101 1.46e-22
extracellular exosome Hs cellular component 57.0 1.12e-08
U4/U6 snRNP Hs cellular component 101 1.46e-22
spliceosomal snRNP complex Hs cellular component 101 1.46e-22

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding Pfam molecular function 1.6E-4
ATP binding Pfam molecular function 1.5E-42

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