Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

56 results

AHC0AAA92YA20

Plate: Plate_92_A20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
PABP_HYD	ProSiteProfiles	Polyadenylate-binding protein/Hyperplastic disc protein
PABP_HYD	SMART	Polyadenylate-binding protein/Hyperplastic disc protein
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	ProSiteProfiles	RNA recognition motif domain
PABP-dom	SUPERFAMILY	PABC (PABP) domain
RRM_dom	SMART	RNA recognition motif domain
PABP_HYD	Pfam	Polyadenylate-binding protein/Hyperplastic disc protein
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
PABP_1234	TIGRFAM	Polyadenylate binding protein, human types 1, 2, 3, 4
RRM_dom_euk	SMART	RNA recognition motif domain, eukaryote

GOSlim

34 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
focal adhesion	Orthology	cellular component
RNA processing	Orthology	biological process
mRNA processing	Orthology	biological process
RNA catabolic process	Orthology	biological process
translational initiation	Orthology	biological process
blood coagulation	Orthology	biological process
protein C-terminus binding	Orthology	molecular function
RNA splicing	Orthology	biological process
membrane	Orthology	cellular component
mRNA metabolic process	Orthology	biological process
extracellular exosome	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
nuclear-transcribed mRNA catabolic process	Orthology	biological process
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
cellular process	Orthology	biological process
mRNA catabolic process	Orthology	biological process
cell development	Orthology	biological process
gamete generation	Orthology	biological process
organelle organization	Orthology	biological process
positive regulation of transcription, DNA-templated	Orthology	biological process

GO (Orthology)

45 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
nuclear-transcribed mRNA poly(A) tail shortening	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
spliceosomal complex	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
focal adhesion	Hs	cellular component
mRNA polyadenylation	Hs	biological process
RNA processing	Hs	biological process
mRNA processing	Hs	biological process
RNA catabolic process	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
blood coagulation	Hs	biological process
protein C-terminus binding	Hs	molecular function
poly(A) binding	Hs	molecular function
poly(U) RNA binding	Hs	molecular function
RNA splicing	Hs	biological process
translation activator activity	Hs	molecular function
cytoplasmic stress granule	Hs	cellular component
membrane	Hs	cellular component
mRNA metabolic process	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
gene silencing by RNA	Hs	biological process
cytoplasmic ribonucleoprotein granule	Hs	cellular component
regulation of mRNA stability	Hs	biological process
positive regulation of translation	Hs	biological process
mRNA stabilization	Hs	biological process
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Hs	biological process
extracellular exosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Hs	biological process
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
oocyte maturation	Hs	biological process
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
chromatin remodeling	Hs	biological process
chromatin-mediated maintenance of transcription	Hs	biological process
nucleus localization	Hs	biological process

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
nucleic acid binding	Hs	molecular function	793
RNA binding	Hs	molecular function	793
mRNA binding	Hs	molecular function	770
mRNA 3'-UTR binding	Hs	molecular function	793
protein binding	Hs	molecular function	793
nucleus	Hs	cellular component	793
spliceosomal complex	Hs	cellular component	793
cytoplasm	Hs	cellular component	793
cytosol	Hs	cellular component	793
focal adhesion	Hs	cellular component	793
protein C-terminus binding	Hs	molecular function	793
poly(A) binding	Hs	molecular function	793
poly(U) RNA binding	Hs	molecular function	793
translation activator activity	Hs	molecular function	793
cytoplasmic stress granule	Hs	cellular component	793
membrane	Hs	cellular component	793
intracellular ribonucleoprotein complex	Hs	cellular component	793
cytoplasmic ribonucleoprotein granule	Hs	cellular component	793
extracellular exosome	Hs	cellular component	793
catalytic step 2 spliceosome	Hs	cellular component	793

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	3.74E-49
RNA binding	TIGRFAM	molecular function	3.8E-236

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences