Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

FOXF1; FOXH1; FOXQ1

Species

P.mammillata

Unique Gene ID

Phmamm.g00003940

Gene Model ID

Phmamm.CG.MTP2014.S134.g03940

Location

S134:148575..155132

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S134.g03940.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

24 results

AHC0AAA17YM12

Plate: Plate_17_M12

AHC0AAA22YG09

Plate: Plate_22_G09

AHC0AAA38YF17

Plate: Plate_38_F17

AHC0AAA41YI12

Plate: Plate_41_I12

AHC0AAA59YC24

Plate: Plate_59_C24

AHC0AAA108YK09

Plate: Plate_108_K09

AHC0AAA113YK05

Plate: Plate_113_K05

AHC0AAA123YG20

Plate: Plate_123_G20

AHC0AAA140YO09

Plate: Plate_140_O09

AHC0AAA143YC22

Plate: Plate_143_C22

AHC0AAA149YB02

Plate: Plate_149_B02

AHC0AAA156YK13

Plate: Plate_156_K13

AHC0AAA88YA23

Plate: Plate_88_A23

AHC0AAA89YI13

Plate: Plate_89_I13

AHC0AAA93YF12

Plate: Plate_93_F12

AHC0AAA99YI10

Plate: Plate_99_I10

AHC0AAA215YI16

Plate: Plate_215_I16

AHC0AAA220YE17

Plate: Plate_220_E17

AHC0AAA237YL09

Plate: Plate_237_L09

AHC0AAA255YB04

Plate: Plate_255_B04

AHC0AAA255YH02

Plate: Plate_255_H02

AHC0AAA256YL23

Plate: Plate_256_L23

AHC0AAA257YE14

Plate: Plate_257_E14

AHC0AAA38YH19

Plate: Plate_38_H19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Fork_head_dom PRINTS Fork head domain
WH_DNA-bd_sf SUPERFAMILY Winged helix DNA-binding domain superfamily
Fork_head_dom SMART Fork head domain
Fork_head_dom CDD Fork head domain
TF_fork_head_CS_2 ProSitePatterns Fork head domain conserved site 2
TF_fork_head_CS_1 ProSitePatterns Fork head domain conserved site1
Fork_head_dom Pfam Fork head domain
Fork_head_dom ProSiteProfiles Fork head domain
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily

GOSlim

34 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
heart development Orthology biological process
anatomical structure morphogenesis Orthology biological process
cell differentiation Orthology biological process
sequence-specific DNA binding Orthology molecular function
transcription regulatory region DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
multicellular organism development Orthology biological process
nuclear part Orthology cellular component
negative regulation of signal transduction Orthology biological process
response to lipid Orthology biological process
transcription factor binding Orthology molecular function
anatomical structure development Orthology biological process
receptor binding Orthology molecular function

GO (Orthology)

40 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
nuclear chromatin Hs cellular component
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription cofactor activity Hs molecular function
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
heart looping Hs biological process
outflow tract morphogenesis Hs biological process
ventricular trabecula myocardium morphogenesis Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transforming growth factor beta receptor signaling pathway Hs biological process
determination of left/right symmetry Hs biological process
anatomical structure morphogenesis Hs biological process
anterior/posterior pattern specification Hs biological process
protein domain specific binding Hs molecular function
cell differentiation Hs biological process
activin responsive factor complex Hs cellular component
negative regulation of intracellular estrogen receptor signaling pathway Hs biological process
embryonic heart tube anterior/posterior pattern specification Hs biological process
enhancer binding Hs molecular function
bHLH transcription factor binding Hs molecular function
sequence-specific DNA binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
SMAD binding Hs molecular function
axial mesoderm development Hs biological process
androgen receptor binding Hs molecular function
co-SMAD binding Hs molecular function
R-SMAD binding Hs molecular function

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nuclear chromatin Hs cellular component 147 3.36e-39
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 112 1.12e-26
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 110 5.28e-26
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 147 3.36e-39
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 110 5.28e-26
RNA polymerase II transcription cofactor activity Hs molecular function 147 3.36e-39
transcriptional activator activity, RNA polymerase II transcription factor binding Hs molecular function 147 3.36e-39
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 147 3.36e-39
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 112 1.12e-26
DNA binding Hs molecular function 147 3.36e-39
transcription factor activity, sequence-specific DNA binding Hs molecular function 147 3.36e-39
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 147 3.36e-39
protein binding Hs molecular function 147 3.36e-39
nucleus Hs cellular component 147 3.36e-39
nucleoplasm Hs cellular component 147 3.36e-39
transcription factor complex Hs cellular component 147 3.36e-39
protein domain specific binding Hs molecular function 147 3.36e-39
activin responsive factor complex Hs cellular component 147 3.36e-39
enhancer binding Hs molecular function 147 3.36e-39
bHLH transcription factor binding Hs molecular function 147 3.36e-39
sequence-specific DNA binding Hs molecular function 147 3.36e-39
transcription regulatory region DNA binding Hs molecular function 147 3.36e-39
SMAD binding Hs molecular function 147 3.36e-39
androgen receptor binding Hs molecular function 147 3.36e-39
co-SMAD binding Hs molecular function 147 3.36e-39
R-SMAD binding Hs molecular function 147 3.36e-39

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding SMART molecular function 1.6E-40
regulation of transcription, DNA-templated SMART biological process 1.6E-40
sequence-specific DNA binding SMART molecular function 1.6E-40