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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S6...'

Gene Card

Best human hits

EIF4A1; EIF4A2; EIF4A3

Species

P.mammillata

Unique Gene ID

Phmamm.g00004004

Gene Model ID

Phmamm.CG.MTP2014.S137.g04004

Location

S137:112532..116825

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S137.g04004.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

25 results

AHC0AAA10YA22

Plate: Plate_10_A22

AHC0AAA3YG15

Plate: Plate_3_G15

AHC0AAA35YK15

Plate: Plate_35_K15

AHC0AAA36YN16

Plate: Plate_36_N16

AHC0AAA41YC04

Plate: Plate_41_C04

AHC0AAA59YI13

Plate: Plate_59_I13

AHC0AAA61YL19

Plate: Plate_61_L19

AHC0AAA62YI09

Plate: Plate_62_I09

AHC0AAA101YM19

Plate: Plate_101_M19

AHC0AAA108YI09

Plate: Plate_108_I09

AHC0AAA114YL08

Plate: Plate_114_L08

AHC0AAA115YC24

Plate: Plate_115_C24

AHC0AAA135YG01

Plate: Plate_135_G01

AHC0AAA142YG17

Plate: Plate_142_G17

AHC0AAA82YP18

Plate: Plate_82_P18

AHC0AAA96YC15

Plate: Plate_96_C15

AHC0AAA162YF22

Plate: Plate_162_F22

AHC0AAA162YI08

Plate: Plate_162_I08

AHC0AAA178YD07

Plate: Plate_178_D07

AHC0AAA194YG18

Plate: Plate_194_G18

AHC0AAA213YO20

Plate: Plate_213_O20

AHC0AAA235YJ10

Plate: Plate_235_J10

AHC0AAA241YG13

Plate: Plate_241_G13

AHC0AAA249YL07

Plate: Plate_249_L07

AHC0AAA264YO19

Plate: Plate_264_O19

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
Helicase_C SMART Helicase, C-terminal
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
RNA-helicase_DEAD-box_CS ProSitePatterns ATP-dependent RNA helicase DEAD-box, conserved site
Helicase_C Pfam Helicase, C-terminal
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
EIF4A PANTHER Eukaryotic initiation factor 4A
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase

GOSlim

25 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
translational initiation Orthology biological process
regulation of gene expression Orthology biological process
membrane Orthology cellular component
nuclear speck Blast cellular component
hydrolase activity Orthology molecular function
neuronal cell body Blast cellular component
perinuclear region of cytoplasm Orthology cellular component
extracellular exosome Orthology cellular component
nuclear-transcribed mRNA catabolic process Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
RNA metabolic process Orthology biological process
cytoplasmic part Orthology cellular component
macromolecular complex Orthology cellular component
nuclear part Blast cellular component
macromolecular complex binding Blast molecular function

GO (Orthology)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
RNA cap binding Hs molecular function
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
double-stranded RNA binding Hs molecular function
mRNA binding Hs molecular function
translation initiation factor activity Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
translation Hs biological process
translational initiation Hs biological process
regulation of translational initiation Hs biological process
translation factor activity, RNA binding Hs molecular function
regulation of gene expression Hs biological process
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
viral process Hs biological process
eukaryotic translation initiation factor 4F complex Hs cellular component
hydrolase activity Hs molecular function
ATPase activity Hs molecular function
perinuclear region of cytoplasm Hs cellular component
extracellular exosome Hs cellular component

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 612 0.0
RNA cap binding Hs molecular function 607 0.0
nucleic acid binding Hs molecular function 612 0.0
RNA binding Hs molecular function 612 0.0
double-stranded RNA binding Hs molecular function 607 0.0
mRNA binding Hs molecular function 607 0.0
translation initiation factor activity Hs molecular function 612 0.0
ATP-dependent RNA helicase activity Hs molecular function 612 0.0
helicase activity Hs molecular function 612 0.0
protein binding Hs molecular function 612 0.0
ATP binding Hs molecular function 612 0.0
nucleus Hs cellular component 546 0.0
nucleoplasm Hs cellular component 546 0.0
spliceosomal complex Hs cellular component 546 0.0
nucleolus Hs cellular component 612 0.0
cytoplasm Hs cellular component 607 0.0
cytosol Hs cellular component 612 0.0
translation factor activity, RNA binding Hs molecular function 607 0.0
poly(A) binding Hs molecular function 546 0.0
membrane Hs cellular component 607 0.0
eukaryotic translation initiation factor 4F complex Hs cellular component 612 0.0
nuclear speck Hs cellular component 546 0.0
hydrolase activity Hs molecular function 612 0.0
ATPase activity Hs molecular function 612 0.0
dendrite Hs cellular component 546 0.0
intracellular ribonucleoprotein complex Hs cellular component 546 0.0
exon-exon junction complex Hs cellular component 546 0.0
selenocysteine insertion sequence binding Hs molecular function 546 0.0
RNA stem-loop binding Hs molecular function 546 0.0
ribonucleoprotein complex binding Hs molecular function 546 0.0
neuronal cell body Hs cellular component 546 0.0
perinuclear region of cytoplasm Hs cellular component 612 0.0
extracellular exosome Hs cellular component 607 0.0
catalytic step 2 spliceosome Hs cellular component 546 0.0

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 2.2E-45
translation initiation factor activity PANTHER molecular function 1.6E-193
ATP-dependent RNA helicase activity PANTHER molecular function 1.6E-193
ATP binding Pfam molecular function 2.2E-45