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GENE CARD

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Gene Card

Best human hits

BARX1; NOTO; VAX1

Species

P.mammillata

Unique Gene ID

Phmamm.g00004116

Gene Model ID

Phmamm.CG.MTP2014.S143.g04116

Location

S143:155429..156922

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

7 results

AHC0AAA24YK06

Plate: Plate_24_K06

AHC0AAA160YM24

Plate: Plate_160_M24

AHC0AAA171YO18

Plate: Plate_171_O18

AHC0AAA202YF01

Plate: Plate_202_F01

AHC0AAA243YF07

Plate: Plate_243_F07

AHC0AAA246YN18

Plate: Plate_246_N18

AHC0AAA261YJ10

Plate: Plate_261_J10

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom Pfam Homeobox domain
HTH_motif PRINTS Helix-turn-helix motif
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom SMART Homeobox domain
Homeobox_dom CDD Homeobox domain
Homeobox_dom ProSiteProfiles Homeobox domain

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 80.1 3.35e-17
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 80.1 3.35e-17
RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding Hs molecular function 79.3 1.76e-16
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 79.3 1.76e-16
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 80.1 3.35e-17
DNA binding Hs molecular function 80.1 3.35e-17
transcription factor activity, sequence-specific DNA binding Hs molecular function 80.1 3.35e-17
nucleus Hs cellular component 80.1 3.35e-17
chromatin DNA binding Hs molecular function 79.3 1.76e-16
sequence-specific DNA binding Hs molecular function 80.1 3.35e-17

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 9.5E-25
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function